mechanics

Input name	Description	Value
alamo.program	which integrator to use (can only be mechanics)	mechanics
alamo.program.mechanics.model	which mechanics model to use	linear.isotropic

Integrator::Mechanics<Model::Solid::Linear::Isotropic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.lambda model#.mu model#.E model#.nu model#.kappa	Specify exactly 2: required Specify exactly two of: lame constant \(\lambda\), shear modulus \(\mu\), Young's modulus \(E\), Poisson's ratio \(\nu\), bulk modulus \(\kappa\). \(\mu\) and \(\lambda\) are how the final values are stored.
model#.planestress	Whether or not to use the `plane stress `_ approximation.	false
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Linear::Cubic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.C11	Elastic constant	1.68
model#.C12	Elastic constant	1.21
model#.C44	Elastic constant	0.75
model#.anglefmt	specify whether using radians or degrees	radians degrees
model#.phi1	Bunge Euler angle \(\phi_1\) about x axis	0.0
model#.Phi	Bunge Euler angle \(\Phi\) about z axis	0.0
model#.phi2	Bunge Euler angle \(\phi_2\) about x axis	0.0
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Affine::Cubic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.C11	Elastic constant	1.68
model#.C12	Elastic constant	1.21
model#.C44	Elastic constant	0.75
model#.anglefmt	specify whether using radians or degrees	radians degrees
model#.phi1	Bunge Euler angle \(\phi_1\) about x axis	0.0
model#.Phi	Bunge Euler angle \(\Phi\) about z axis	0.0
model#.phi2	Bunge Euler angle \(\phi_2\) about x axis	0.0
model#.F0	Eigenstrain
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Affine::Hexagonal>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.C11	Elastic constant	required
model#.C12	Elastic constant	required
model#.C13	Elastic constant	required
model#.C33	Elastic constant	required
model#.C44	Elastic constant	required
model#.phi1	Bunge Euler angle \(\phi_1\)	0.0
model#.Phi	Bunge Euler angle \(\Phi\)	0.0
model#.phi2	Bunge Euler angle \(\phi_2\)	0.0
model#.F0	Eigenstrain matrix. Can be defined in 2D or 3D.
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Affine::Isotropic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.lambda model#.mu model#.E model#.nu model#.kappa	Specify exactly 2: required Specify exactly two of: lame constant \(\lambda\), shear modulus \(\mu\), Young's modulus \(E\), Poisson's ratio \(\nu\), bulk modulus \(\kappa\). \(\mu\) and \(\lambda\) are how the final values are stored.
model#.F0	Eigendeformation gradient
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Linear::Laplacian>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.alpha	Coefficient for the Laplacian	1.0
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Finite::NeoHookean>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.lambda model#.mu model#.E model#.nu model#.kappa	Specify exactly 2: required Lame constant \(\lambda\), shear modulus \(\mu\), Young's modulus \(E\), Poisson's ratio \(\nu\), bulk modulus \(K\). You can currently specify (mu and kappa), (lambda and mu), or (E and nu).
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Finite::NeoHookeanPredeformed>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.lambda model#.mu model#.E model#.nu model#.kappa	Specify exactly 2: required Lame constant \(\lambda\), shear modulus \(\mu\), Young's modulus \(E\), Poisson's ratio \(\nu\), bulk modulus \(K\). You can currently specify (mu and kappa), (lambda and mu), or (E and nu).
model#.F0	Large-deformation eigendeformation (Identity = no deformation)
model#.eps0	Small-deformation eigendeformation (Zero = no deformation)
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Finite::PseudoLinear::Cubic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.C11	Elastic constant	1.68
model#.C12	Elastic constant	1.21
model#.C44	Elastic constant	0.75
model#.phi1	Bunge Euler angle \(\phi_1\)	0.0
model#.Phi	Bunge Euler angle \(\Phi\)	0.0
model#.phi2	Bunge Euler angle \(\phi_2\)	0.0
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Finite::PseudoAffine::Cubic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.F0	Large-strain eigendeformation (Identity = no deformation)
model#.eps0	Small-strain eigendeformation (Zero = no deformation)
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Affine::J2>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.sigma0	J2 Yield criterion	1.0
model#.hardening	Hardening coefficient (negative value disables rate hardening)	-1.0
model#.ratecoeff	Rate coefficient (negative value disables rate hardening)	-1.0
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

Integrator::Mechanics<Model::Solid::Finite::CrystalPlastic>

Input name	Description	Value
type	Type of mecahnics to use. Static: do full implicit solve. Dynamic: evolve dynamic equations with explicit dynamics Disable: do nothing.	disable static dynamic
time_evolving	Treat mechanics fields as changing in time. [false] You should use this if you care about other physics driven by the output of this integrator.	false
plot_disp	Include displacement field in output	true
plot_rhs	Include right-hand side in output	true
plot_psi	Include \(\psi\) field in output	true
plot_stress	Include stress in output	true
plot_strain	Include strain in output	true
viscous.mu_dashpot	Dashpot damping (damps velocity)	0.0
viscous.mu_newton	Newtonian viscous damping (damps velocity gradient)	0.0
velocity.ic.type	Initializer for RHS	none expression
bc.type	Select the mechanical boundary conditions constant tensiontest expression
	bc.constant.type.xloylozlo	3D Corner
bc.constant.type.xloylozhi	3D Corner
bc.constant.type.xloyhizlo	3D Corner
bc.constant.type.xloyhizhi	3D Corner
bc.constant.type.xhiylozlo	3D Corner
bc.constant.type.xhiylozhi	3D Corner
bc.constant.type.xhiyhizlo	3D Corner
bc.constant.type.xhiyhizhi	3D Corner
bc.constant.type.ylozlo	3D Edge
bc.constant.type.ylozhi	3D Edge
bc.constant.type.yhizlo	3D Edge
bc.constant.type.yhizhi	3D Edge
bc.constant.type.zloxlo	3D Edge
bc.constant.type.zloxhi	3D Edge
bc.constant.type.zhixlo	3D Edge
bc.constant.type.zhixhi	3D Edge
bc.constant.type.xloylo	3D Edge / 2D Corner
bc.constant.type.xloyhi	3D Edge / 2D Corner
bc.constant.type.xhiylo	3D Edge / 2D Corner
bc.constant.type.xhiyhi	3D Edge / 2D Corner
bc.constant.type.xlo	3D Face / 2D Edge
bc.constant.type.xhi	3D Face / 2D Edge
bc.constant.type.ylo	3D Face / 2D Edge
bc.constant.type.yhi	3D Face / 2D Edge
bc.constant.type.zlo	3D Face
bc.constant.type.zhi	3D Face
bc.constant.val.xloylozlo	3D Corner
bc.constant.val.xloylozhi	3D Corner
bc.constant.val.xloyhizlo	3D Corner
bc.constant.val.xloyhizhi	3D Corner
bc.constant.val.xhiylozlo	3D Corner
bc.constant.val.xhiylozhi	3D Corner
bc.constant.val.xhiyhizlo	3D Corner
bc.constant.val.xhiyhizhi	3D Corner
bc.constant.val.ylozlo	3D Edge
bc.constant.val.ylozhi	3D Edge
bc.constant.val.yhizlo	3D Edge
bc.constant.val.yhizhi	3D Edge
bc.constant.val.zloxlo	3D Edge
bc.constant.val.zloxhi	3D Edge
bc.constant.val.zhixlo	3D Edge
bc.constant.val.zhixhi	3D Edge
bc.constant.val.xloylo	3D Edge / 2D Corner
bc.constant.val.xloyhi	3D Edge / 2D Corner
bc.constant.val.xhiylo	3D Edge / 2D Corner
bc.constant.val.xhiyhi	3D Edge / 2D Corner
bc.constant.val.xlo	3D Face / 2D Edge
bc.constant.val.xhi	3D Face / 2D Edge
bc.constant.val.ylo	3D Face / 2D Edge
bc.constant.val.yhi	3D Face / 2D Edge
bc.constant.val.zlo	3D Face
bc.constant.val.zhi	3D Face
bc.tensiontest.type	Tension test type.	uniaxial_stress_clamp uniaxial_kolsky uniaxial_stress uniaxial_strain
bc.tensiontest.disp	Applied displacement (can be interpolator)
bc.tensiontest.trac	Applied traction (can be interpolator)
print_model	Print out model variables (if enabled by model)	false
rhs.type	initial condition for right hand side (body force) constant expression trig
	rhs.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
rhs.expression.coord	coordinate system to use	cartesian polar
rhs.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
rhs.trig.nr	Number of real (cosin) waves
rhs.trig.ni	Number of imaginary (sin) waves
rhs.trig.dim	Spatial dimension
rhs.trig.alpha	Multiplier
interval	Timestep interval for elastic solves (default - solve every time)	0
max_coarsening_level	Maximum multigrid coarsening level (default - none, maximum coarsening)	-1
print_residual	Whether to include residual output field	false
elastic_ref_threshold	Whether to refine based on elastic solution	0.01
zero_out_displacement	Set this to true to zero out the displacement before each solve. (This is a temporary fix - we need to figure out why this is needed.)	false
tstart	Time to start doing the elastic solve (by default, start immediately)	-1.0
nmodels	Number of elastic model varieties	1
model#.tau_crss	Critical resolved shear stress \(\tau_{crss}\)
model#.gammadot0	Rate hardening coefficient \(\dot{\gamma}_0\)	1.0
model#.m_rate_inv	Inverse of the hardening exponent \(\frac{1}{m}\)	0.5
model#.tstart	Time to activate plastic slip	0.0
eta_ref_threshold	Refinement threshold for eta field	0.01
ref_threshold	Refinement threshold for strain gradient	0.01
model_neumann_boundary	Explicity impose neumann condition on model at domain boundaries (2d only)	false
ic.type	Select the initial condition for eta constant ellipse voronoi bmp png expression psread
	ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
ic.ellipse.x0	Coorinates of ellipse center
ic.ellipse.eps	Diffuse boundary thickness	0.0
ic.ellipse.A	DxD square matrix defining an ellipse.
ic.ellipse.a	If A is not defined, then assume a sphere with radius a
ic.ellipse.number_of_inclusions	Number of ellipses
ic.ellipse.center	center of the ellipse
ic.ellipse.x0	center of the ellipse
ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
ic.ellipse.A	Same
ic.ellipse.radius	Array of radii [depricated]
ic.ellipse.eps	Regularization for smooth boundary
ic.ellipse.invert	Flip the inside and the outside
ic.voronoi.number_of_grains	Number of grains
ic.voronoi.alpha	Value to take in the region [1.0]
ic.voronoi.seed	Random seed to use
ic.bmp.filename	BMP filename.	file path
ic.bmp.fit	How to position image in space	stretch fitheight fitwidth coord
ic.bmp.coord.lo	Location of lower-left corner in the domain
ic.bmp.coord.hi	Location of upper-right corner in the domain
ic.bmp.channel	Color channel to use	r g b R G B
ic.bmp.min	Scaling value - minimum	0.0
ic.bmp.max	Scaling value - maximum	255.0
ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
ic.png.filename	BMP filename.	file path
ic.png.fit	how to position the image	stretch fitheight fitwidth coord
ic.png.coord.lo	Lower-left coordinates of image in domain
ic.png.coord.hi	Upper-right coordinates of image in domain
ic.png.min	Desired minimum value to scale pixels by	0.0
ic.png.max	Desired maximum value to scale pixels by	255.0
ic.expression.coord	coordinate system to use	cartesian polar
ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
ic.psread.eps	Diffuseness of the sphere boundary
ic.psread.filename	Location of .xyzr file	file path
ic.psread.verbose	Verbosity (used in parser only)
ic.psread.mult	Coordinate multiplier
ic.psread.invert	Coordinate multiplier
ic.psread.x0	Coordinate offset
eta.reset_on_regrid	Whether to re-initialize eta when re-gridding occurs. Default is false unless eta ic is set, then default is. true.	true
psi.ic.type	Select initial condition for psi field ellipse constant expression psread png
	psi.ic.ellipse.x0	Coorinates of ellipse center
psi.ic.ellipse.eps	Diffuse boundary thickness	0.0
psi.ic.ellipse.A	DxD square matrix defining an ellipse.
psi.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
psi.ic.ellipse.number_of_inclusions	Number of ellipses
psi.ic.ellipse.center	center of the ellipse
psi.ic.ellipse.x0	center of the ellipse
psi.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
psi.ic.ellipse.A	Same
psi.ic.ellipse.radius	Array of radii [depricated]
psi.ic.ellipse.eps	Regularization for smooth boundary
psi.ic.ellipse.invert	Flip the inside and the outside
psi.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
psi.ic.expression.coord	coordinate system to use	cartesian polar
psi.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
psi.ic.psread.eps	Diffuseness of the sphere boundary
psi.ic.psread.filename	Location of .xyzr file	file path
psi.ic.psread.verbose	Verbosity (used in parser only)
psi.ic.psread.mult	Coordinate multiplier
psi.ic.psread.invert	Coordinate multiplier
psi.ic.psread.x0	Coordinate offset
psi.ic.png.channel	Color channel to use (options: r, R, g, G, b, B, a, A)	r g b a R G B A
psi.ic.png.filename	BMP filename.	file path
psi.ic.png.fit	how to position the image	stretch fitheight fitwidth coord
psi.ic.png.coord.lo	Lower-left coordinates of image in domain
psi.ic.png.coord.hi	Upper-right coordinates of image in domain
psi.ic.png.min	Desired minimum value to scale pixels by	0.0
psi.ic.png.max	Desired maximum value to scale pixels by	255.0
psi.reset_on_regrid	Whether to re-initialize psi when re-gridding occurs. Default is false unless a psi ic is set, then default is true.	true
trac_normal.ic.type	Read in IC for the "normal traction" field (applied at diffuse boundaries) ellipse constant expression psread
	trac_normal.ic.ellipse.x0	Coorinates of ellipse center
trac_normal.ic.ellipse.eps	Diffuse boundary thickness	0.0
trac_normal.ic.ellipse.A	DxD square matrix defining an ellipse.
trac_normal.ic.ellipse.a	If A is not defined, then assume a sphere with radius a
trac_normal.ic.ellipse.number_of_inclusions	Number of ellipses
trac_normal.ic.ellipse.center	center of the ellipse
trac_normal.ic.ellipse.x0	center of the ellipse
trac_normal.ic.ellipse.A	either a vector containing ellipse radii, or a matrix defining the ellipse
trac_normal.ic.ellipse.A	Same
trac_normal.ic.ellipse.radius	Array of radii [depricated]
trac_normal.ic.ellipse.eps	Regularization for smooth boundary
trac_normal.ic.ellipse.invert	Flip the inside and the outside
trac_normal.ic.constant.value	Array of constant values. The number of values should equal either 1 or N where N is the number of fab components	required
trac_normal.ic.expression.coord	coordinate system to use	cartesian polar
trac_normal.ic.expression.region#	Mathematical expression in terms of x,y,z,t (if coord=cartesian) or r,theta,z,t (if coord=polar) and any defined constants.	# = 0,1,2,...
trac_normal.ic.psread.eps	Diffuseness of the sphere boundary
trac_normal.ic.psread.filename	Location of .xyzr file	file path
trac_normal.ic.psread.verbose	Verbosity (used in parser only)
trac_normal.ic.psread.mult	Coordinate multiplier
trac_normal.ic.psread.invert	Coordinate multiplier
trac_normal.ic.psread.x0	Coordinate offset

\(\quad\)