Sphere.H

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//
// Initialize a sphere region in which the field \‍(\eta=1\‍).
// Can be a 3D sphere (xyz) or oriented around any of the three
// axes. 
//
// :bdg-warning:`This functionality is replaced by IC::Expression.`
// 
 
#ifndef IC_SPHERE_H_
#define IC_SPHERE_H_
 
#include <cmath>
 
#include "IO/ParmParse.H"
#include "IC/IC.H"
 
/// Initialize a spherical inclusion
namespace IC
{
class Sphere: public IC<Set::Scalar>
{
public:
    static constexpr const char* name = "sphere";
 
    /// Sphere is also used for a cylindrical case, but switching from the default type to the desired orientation.
    /// For instance, XY refers to a cylinder with the circular faces in the XY plane.
    enum Type
    {
        XYZ,
        YZ,
        ZX,
        XY
    };
 
    Sphere(amrex::Vector<amrex::Geometry>& _geom): IC(_geom) {}
    Sphere(amrex::Vector<amrex::Geometry>& _geom, IO::ParmParse& pp): IC(_geom)
    {
        pp_queryclass(*this);
    }
    Sphere(amrex::Vector<amrex::Geometry>& _geom, IO::ParmParse& pp, std::string name): IC(_geom)
    {
        pp_queryclass(name, *this);
    }
    /// Constructor defining radius, center, dimension/orientation, and field values within and outside of the area.
    Sphere(amrex::Vector<amrex::Geometry>& _geom, Set::Scalar _radius, Set::Vector _center, Type _type = Type::XYZ, Set::Scalar _alpha_in = 1, Set::Scalar _alpha_out = 0)
        : IC(_geom)
    {
        Define(_radius, _center, _type, _alpha_in, _alpha_out);
    }
 
    void Define(Set::Scalar a_radius,
        Set::Vector a_center,
        Type a_type,
        Set::Scalar a_alpha_in,
        Set::Scalar a_alpha_out)
    {
        radius = a_radius;
        center = a_center;
        type = a_type;
        alpha_in = a_alpha_in;
        alpha_out = a_alpha_out;
    }
 
    void Add(const int& lev, Set::Field<Set::Scalar>& a_field, Set::Scalar)
    {
        bool cellcentered = (a_field[0]->boxArray().ixType() == amrex::IndexType(amrex::IntVect::TheCellVector()));
        int ncomp = a_field[0]->nComp();
 
        for (amrex::MFIter mfi(*a_field[lev], amrex::TilingIfNotGPU()); mfi.isValid(); ++mfi)
        {
            amrex::Box bx = mfi.tilebox();
            // bx.grow(a_field[lev]->nGrow());
 
            amrex::Array4<Set::Scalar> const& field = a_field[lev]->array(mfi);
            amrex::ParallelFor(bx, [=] AMREX_GPU_DEVICE(int i, int j, int k)
            {
 
                Set::Scalar AMREX_D_DECL(x, y, z);
                if (cellcentered)
                {
                    AMREX_D_TERM(x = geom[lev].ProbLo()[0] + ((amrex::Real)(i)+0.5) * geom[lev].CellSize()[0];,
                        y = geom[lev].ProbLo()[1] + ((amrex::Real)(j)+0.5) * geom[lev].CellSize()[1];,
                        z = geom[lev].ProbLo()[2] + ((amrex::Real)(k)+0.5) * geom[lev].CellSize()[2];);
                }
                else
                {
                    AMREX_D_TERM(x = geom[lev].ProbLo()[0] + (amrex::Real)(i)*geom[lev].CellSize()[0];,
                        y = geom[lev].ProbLo()[1] + (amrex::Real)(j)*geom[lev].CellSize()[1];,
                        z = geom[lev].ProbLo()[2] + (amrex::Real)(k)*geom[lev].CellSize()[2];);
                }
 
                Set::Scalar rsq = NAN;
 
                if (type == Type::XYZ)
                {
                    // 3D Sphere
                    rsq =
                        AMREX_D_TERM((x - center(0)) * (x - center(0)),
                            +(y - center(1)) * (y - center(1)),
                            +(z - center(2)) * (z - center(2)));
                }
                else if (type == Type::XY)
                {
                    // Cylinder along Z axis
                    rsq =
                        AMREX_D_TERM((x - center(0)) * (x - center(0)),
                            +(y - center(1)) * (y - center(1)),
                            );
                }
                else if (type == Type::YZ)
                {
                    // Cylinder along X axis
                    rsq =
                        AMREX_D_TERM(,
                            +(y - center(1)) * (y - center(1)),
                            +(z - center(2)) * (z - center(2)));
                }
                else if (type == Type::ZX)
                {
                    // Cylinder along Y axis
                    rsq =
                        AMREX_D_TERM((x - center(0)) * (x - center(0)),
                            ,
                            +(z - center(2)) * (z - center(2)));
                }
 
                if (rsq < radius * radius)
                {
                    field(i, j, k, 0) = alpha_in;
                    if (ncomp > 1) field(i, j, k, 1) = 0.;
                }
                else
                {
                    field(i, j, k, 0) = alpha_out;
                    if (ncomp > 1) field(i, j, k, 1) = 1;
                }
            });
        }
    };
    // This is a somewhat antiquated IC that will eventually be replaced
    // with the Expression IC.
    static void Parse(Sphere& value, IO::ParmParse& pp)
    {
        pp_query_default("radius", value.radius,1.0); // Radius of the sphere
        pp_queryarr("center", value.center); // Vector location of the sphere center
        pp_query_default("inside", value.alpha_in,1.0); // Value of the field inside the sphere
        pp_query_default("outside", value.alpha_out,0.0); // Value of the field outside teh sphere
        std::string type;
        // Type - can be cylinder oriented along the x, y, z directions or full sphere.
        pp_query_validate("type", type, {"xyz","yz","zx","xy"}); 
        if (type == "yz")  value.type = Type::YZ;
        if (type == "zx")  value.type = Type::ZX;
        if (type == "xy")  value.type = Type::XY;
        if (type == "xyz") value.type = Type::XYZ;
    }
 
private:
    Set::Vector center = Set::Vector::Zero();
    Set::Scalar radius = NAN;
    Set::Scalar alpha_in = NAN;
    Set::Scalar alpha_out = NAN;
    Type type = Type::XYZ;
};
}
#endif