Elastic.H

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#ifndef OPERATOR_ELASTIC_H_
#define OPERATOR_ELASTIC_H_
 
#include <AMReX_MLCellLinOp.H>
#include <AMReX_Array.H>
#include <limits>
#include "Set/Set.H"
#include "Operator/Operator.H"
#include "Model/Solid/Solid.H"
#include "BC/Operator/Elastic/Elastic.H"
#include "Numeric/Stencil.H"
#include "IC/IC.H"
 
using namespace amrex;
 
namespace Operator
{
/// 
/// \todo Remove Elastic derived classes. They have been replaced with the Model construction.
/// 
template<int SYM>
class Elastic : public Operator<Grid::Node>
{
    using MATRIX4   = Set::Matrix4<AMREX_SPACEDIM,SYM>;
    using TArrayBox = amrex::BaseFab<MATRIX4>;
    using MultiTab  = amrex::FabArray<TArrayBox>;
public:
    enum class BC {Displacement, Traction, Periodic, Neumann}; 
    enum class Boundary {Lo, Hi, None};
 
    Elastic () {}
    Elastic (const Vector<Geometry>& a_geom,
        const Vector<BoxArray>& a_grids,
        const Vector<DistributionMapping>& a_dmap,
        const LPInfo& a_info);
    virtual ~Elastic ();
    Elastic (const Elastic&) = delete;
    Elastic (Elastic&&) = delete;
    Elastic& operator= (const Elastic&) = delete;
    Elastic& operator= (Elastic&&) = delete;
 
    void define (const Vector<Geometry>& a_geom,
            const Vector<BoxArray>& a_grids,
            const Vector<DistributionMapping>& a_dmap,
            const LPInfo& a_info = LPInfo(),
            const Vector<FabFactory<FArrayBox> const*>& a_factory = {});
 
    virtual void SetHomogeneous (bool a_homogeneous) override {m_homogeneous = a_homogeneous;}
    void SetModel (Set::Matrix4<AMREX_SPACEDIM,SYM> &a_model);
    void SetModel (int amrlev, const MultiTab& a_model);
    void SetModel (const amrex::Vector<MultiTab> & a_model)
    { for (int ilev = 0; ilev < a_model.size(); ilev++) SetModel(ilev,a_model[ilev]);}
    void SetModel (const Set::Field<Set::Matrix4<AMREX_SPACEDIM,SYM>> & a_model)
    { for (int ilev = 0; ilev < a_model.size(); ilev++) SetModel(ilev,*a_model[ilev]);}
    void SetPsi (int amrlev, const amrex::MultiFab& a_psi);
    void SetPsi (int amrlev, const amrex::MultiFab& a_psi, const Set::Scalar &a_psi_small)
    {m_psi_small = a_psi_small; SetPsi(amrlev,a_psi);}
 
    /// The different types of Boundary Condtiions are listed in the `BC::Operator::Elastic` documentation
    ///
    void SetBC (::BC::Operator::Elastic::Elastic *a_bc) 
    {
        m_bc = a_bc;
        m_bc_set = true;
    };
    ::BC::Operator::Elastic::Elastic & GetBC()
    {
        return *m_bc;
    }
 
    /// Compute strain \f$\mathbf{\epsilon}\f$ given the displacement field \f$\mathbf{u}\f$
    /// by
    ///   \f[\mathbf{\epsilon}_{ij} = \frac{1}{2}(u_{i,j} + u_{j,i})\f]
    /// 
    void Strain (int amrlev, amrex::MultiFab& epsfab, const amrex::MultiFab& ufab, bool voigt = false) const;
 
    /// Compute stress \f$\mathbf{\sigma}\f$ given the displacement field \f$\mathbf{u}\f$
    /// by
    ///   \f[\mathbf{\sigma}_{ij} = \mathbb{C}_{ijkl}\,u_{k,l}\f]
    /// where, \f$\mathbb{C}\f$ is furnished by the templated `model`
    /// 
    void Stress (int amrlev, amrex::MultiFab& sigmafab, const amrex::MultiFab& ufab, bool voigt = false, bool a_homogeneous=false);
 
    /// Compute energy density \f$\mathbb{W}\f$ given the displacement field \f$\mathbf{u}\f$
    /// by
    ///   \f[\mathbb{W} = \mathbb{\Sigma}\mathbb{\Sigma}\mathbf{\sigma}_{ij}\mathbf{\epsilon}_{ij}\f]
    /// where \f$\mathbf{\sigma}\f$ and \f$\mathbf{\epsilon}\f$ are as defined above
    ///
    void Energy (int amrlev, amrex::MultiFab& energy, const amrex::MultiFab& u, bool a_homogeneous=false);
 
    //void Energy (int amrlev, amrex::MultiFab& energies, const amrex::MultiFab& u, std::vector<SOLID> models, bool a_homogeneous=false);
 
    /// This function is depricated and should not be used. Use the other `SetBC` function.
    ///
    void SetBC(const std::array<std::array<BC,AMREX_SPACEDIM>,AMREX_SPACEDIM> &a_bc_lo,
            const std::array<std::array<BC,AMREX_SPACEDIM>,AMREX_SPACEDIM> &a_bc_hi)
    {
        Util::Abort(INFO,"This is now depricated. Use the other SetBC function.");
        m_bc_lo = a_bc_lo;m_bc_hi = a_bc_hi;
    };
 
    void Error0x (int amrlev, int mglev, MultiFab& R0x, const MultiFab& x) const;
 
    void SetTesting(bool a_testing) {m_testing = a_testing;}
    void SetUniform(bool a_uniform) {m_uniform = a_uniform;}
    virtual void SetAverageDownCoeffs(bool a_average_down_coeffs) override
    {m_average_down_coeffs = a_average_down_coeffs;}
    
    using Operator::Reflux;
 
protected:
 
    virtual void Diagonal (int amrlev, int mglev, amrex::MultiFab& diag) override;
 
    virtual void Fapply (int amrlev, int mglev, MultiFab& out, const MultiFab& in) const override final;
    virtual void FFlux (int amrlev, const MFIter& mfi,
                        const std::array<FArrayBox*,AMREX_SPACEDIM>& flux,
                        const FArrayBox& sol, const int face_only=0) const final;
 
 
 
 
    virtual int getNComp() const override {return AMREX_SPACEDIM;};
    virtual bool isCrossStencil () const { return false; }
    virtual void prepareForSolve () override
    {
        if (!m_model_set) Util::Abort(INFO,"Attempting to use operator before calling SetModel!");
        if (!m_bc_set) Util::Warning(INFO,"Attempting to use operator before calling SetBC!");
        Operator<Grid::Node>::prepareForSolve();
    };
 
private:
    /// Simple arrays storing boundary conditions for each component and each face.
    std::array<std::array<BC,AMREX_SPACEDIM>, AMREX_SPACEDIM> m_bc_lo; // m_bc_lo[face][dimension]
    std::array<std::array<BC,AMREX_SPACEDIM>, AMREX_SPACEDIM> m_bc_hi; // m_bc_hi[face][dimension]
 
    /// This is a multifab-type object containing objects of type
    /// Model::Solid::Elastic::Isotropic::Isotropic
    /// (or some other model type). T is the template argument.
    /// The models contain elastic constants and contain methods for converting strain to stress
    amrex::Vector<Set::Field<Set::Matrix4<AMREX_SPACEDIM,SYM>>> m_ddw_mf;
 
    // This is a mask variable.
    amrex::Vector<Set::Field<Set::Scalar>> m_psi_mf;
    Set::Scalar m_psi_small = 1E-8;
    bool m_psi_set = false;
 
    virtual void averageDownCoeffs () override;
    void averageDownCoeffsDifferentAmrLevels (int fine_amrlev);
    
    /// \fn averageDownCoeffsSameAmrLevel
    /// \brief Update coarse-level AMR coefficients with data from fine level
    ///
    /// This function is called before the solve, and it updates the Matrix4 coefficients
    /// on coarse levels with averaged versions on the fine levels.
    /// Typically, this is not necessary, since the coefficients are computed on each level
    /// already. 
    /// However, there are some cases where this messes up the multigrid solver.
    /// (Phase field fracture is the primary example.)
    /// 
    /// This is disabled by default. In order to enable, call
    ///    
    ///     elasticoperator.SetAverageDownCoeffs(true);
    ///
    void averageDownCoeffsSameAmrLevel (int amrlev);
 
    void FillBoundaryCoeff (MultiTab& sigma, const amrex::Periodicity& p);
    void FillBoundaryCoeff (MultiFab& psi, const amrex::Periodicity& p);
 
    bool m_testing = false;
    bool m_uniform = false;
    bool m_homogeneous = false;
 
    bool m_average_down_coeffs = false;
 
    ::BC::Operator::Elastic::Elastic *m_bc;
 
    bool m_model_set = false;
    bool m_bc_set = false;
    
public:
    static void Parse(Elastic<SYM> & value, IO::ParmParse & pp)
    {
        // Regularization offset value used in near-singular elastic solves.
        // It should be small - if it is too large, you will get better convergence
        // but less correct values!
        pp_query("small",value.m_psi_small); 
    }
 
};
}
 
#endif