Inheritance diagram for Integrator::TopOp< MODEL >:

Collaboration diagram for Integrator::TopOp< MODEL >:

Public Member Functions
	TopOp ()

	TopOp (IO::ParmParse &pp)

void	Initialize (int lev) override

virtual void	UpdateModel (int a_step, Set::Scalar) override

void	Advance (int lev, Set::Scalar time, Set::Scalar dt) override

void	Integrate (int amrlev, Set::Scalar time, int step, const amrex::MFIter &mfi, const amrex::Box &box) override

void	TagCellsForRefinement (int lev, amrex::TagBoxArray &a_tags, Set::Scalar a_time, int a_ngrow) override

Public Member Functions inherited from Integrator::Base::Mechanics< MODEL >
	Mechanics ()

Public Member Functions inherited from Integrator::Integrator
	Integrator ()

virtual	~Integrator ()

void	InitData ()

void	Restart (std::string restartfile, bool a_node=false)

void	Evolve ()

void	SetFilename (std::string _plot_file)

std::string	GetFilename ()

void	regrid (int lbase, Set::Scalar time, bool initial=false) override

void	InitFromScratch (Set::Scalar time)

template<class T , int d>
ALAMO_SINGLE_DEFINITION void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string name, bool writeout, bool evolving)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving)

template<class T >
AMREX_ATTRIBUTE_WEAK void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving)

Static Public Member Functions
static void	Parse (TopOp &value, IO::ParmParse &pp)

Static Public Member Functions inherited from Integrator::Base::Mechanics< MODEL >
static void	Parse (Mechanics &value, IO::ParmParse &pp)

Protected Attributes
MODEL	model

IC::IC *	ic_psi = nullptr

BC::BC< Set::Scalar > *	bc_psi = nullptr

Set::Scalar	m_eta_ref_threshold = NAN

Set::Field< Set::Scalar >	psi_old_mf

Set::Scalar	alpha = NAN

Set::Scalar	beta = NAN

Set::Scalar	gamma = NAN

Numeric::Interpolator::Linear< Set::Scalar >	L

Set::Scalar	volume0 = NAN

Numeric::Interpolator::Linear< Set::Scalar >	lambda

Set::Scalar	volume = NAN

Set::Scalar	w_chem_potential = NAN

Set::Scalar	w_bndry = NAN

Set::Scalar	w_elastic = NAN

Protected Attributes inherited from Integrator::Base::Mechanics< MODEL >
Set::Field< MODEL >	model_mf

Set::Field< MATRIX4 >	ddw_mf

Set::Field< Set::Scalar >	psi_mf

bool	psi_on = false

int	m_interval = 0

Type	m_type = Type::Static

Set::Field< Set::Vector >	disp_mf

Set::Field< Set::Vector >	rhs_mf

Set::Field< Set::Vector >	res_mf

Set::Field< Set::Matrix >	stress_mf

Set::Field< Set::Matrix >	strain_mf

Set::Field< Set::Vector >	disp_old_mf

Set::Field< Set::Vector >	vel_mf

Set::Field< Set::Vector >	vel_old_mf

Set::Scalar	rho = 1.0

Set::Scalar	mu_dashpot = NAN

Set::Scalar	mu_newton = NAN

Set::Vector	trac_hi [AMREX_SPACEDIM]

Set::Vector	disp_hi [AMREX_SPACEDIM]

IC::IC *	ic_rhs = nullptr

BC::BC< Set::Scalar > *	mybc

IC::IC *	velocity_ic = nullptr

Solver::Nonlocal::Newton< MODEL >	solver

BC::Operator::Elastic::Elastic *	bc

Set::Scalar	m_elastic_ref_threshold = 0.01

bool	m_print_model = false

bool	m_print_residual = false

bool	m_time_evolving = false

int	m_max_coarsening_level = -1

bool	m_zero_out_displacement = false

bool	plot_disp = true

bool	plot_stress = true

bool	plot_strain = true

bool	plot_psi = true

bool	plot_rhs = true

Set::Scalar	tstart = -1

Protected Attributes inherited from Integrator::Integrator
amrex::Vector< amrex::Real >	t_new

amrex::Vector< int >	istep

std::string	plot_file { "plt" }

amrex::Real	timestep = NAN

bool	integrate_variables_before_advance = true

bool	integrate_variables_after_advance = false

struct {
int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::string > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

bool any = true

bool all = false

}	node

struct {
int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::string > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

bool any = true

bool all = false

}	cell

std::vector< BaseField * >	m_basefields

std::vector< BaseField * >	m_basefields_cell

BC::Nothing	bcnothing

struct {
int interval = -1

Set::Scalar dt = NAN

int plot_int = -1

Set::Scalar plot_dt = NAN

int number = 0

std::vector< Set::Scalar * > vars

std::vector< std::string > names

std::vector< bool > extensives

}	thermo

int	regrid_int = -1

int	base_regrid_int = -1

std::string	restart_file_cell = ""

std::string	restart_file_node = ""

struct {
int on = 0

std::vector< amrex::Box > box

}	explicitmesh

int	abort_on_nan = true

Additional Inherited Members
Public Types inherited from Integrator::Base::Mechanics< MODEL >
enum	Type { Static, Dynamic, Disable }

Protected Types inherited from Integrator::Base::Mechanics< MODEL >
typedef Set::Matrix4< AMREX_SPACEDIM, MODEL::sym >	MATRIX4

Protected Member Functions inherited from Integrator::Base::Mechanics< MODEL >
virtual void	TimeStepBegin (Set::Scalar a_time, int a_step) override

Protected Member Functions inherited from Integrator::Integrator
virtual void	TimeStepComplete (Set::Scalar, int)

virtual void	Regrid (int, Set::Scalar)

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout)

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, int ncomp, std::string name, bool writeout)

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, int ncomp, int nghost, std::string name, bool writeout)

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving=true)

template<class T , int d>
void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string, bool writeout, bool evolving)

void	SetFinestLevel (const int a_finestlevel)

void	RegisterIntegratedVariable (Set::Scalar *integrated_variable, std::string name, bool extensive=true)

void	SetTimestep (Set::Scalar _timestep)

void	SetPlotInt (int plot_int)

void	SetThermoInt (int a_thermo_int)

void	SetThermoPlotInt (int a_thermo_plot_int)

void	SetStopTime (Set::Scalar a_stop_time)

void	IntegrateVariables (Set::Scalar cur_time, int step)

void	WritePlotFile (bool initial=false) const

void	WritePlotFile (std::string prefix, Set::Scalar time, int step) const

void	WritePlotFile (Set::Scalar time, amrex::Vector< int > iter, bool initial=false, std::string prefix="") const

Detailed Description

template<class MODEL>
class Integrator::TopOp< MODEL >

Definition at line 39 of file TopOp.H.

Constructor & Destructor Documentation

◆ TopOp() [1/2]

template<class MODEL >

Integrator::TopOp< MODEL >::TopOp ( )

inline

Definition at line 43 of file TopOp.H.

◆ TopOp() [2/2]

template<class MODEL >

Integrator::TopOp< MODEL >::TopOp ( IO::ParmParse & pp )

inline

Definition at line 44 of file TopOp.H.

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Member Function Documentation

◆ Advance()

template<class MODEL >

void Integrator::TopOp< MODEL >::Advance	(	int	lev,
		Set::Scalar	time,
		Set::Scalar	dt
	)

inlineoverridevirtual

Reimplemented from Integrator::Base::Mechanics< MODEL >.

Definition at line 121 of file TopOp.H.

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◆ Initialize()

template<class MODEL >

void Integrator::TopOp< MODEL >::Initialize ( int lev )

inlineoverridevirtual

Reimplemented from Integrator::Base::Mechanics< MODEL >.

Definition at line 97 of file TopOp.H.

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◆ Integrate()

template<class MODEL >

void Integrator::TopOp< MODEL >::Integrate	(	int	amrlev,
		Set::Scalar	time,
		int	step,
		const amrex::MFIter &	mfi,
		const amrex::Box &	box
	)

inlineoverridevirtual

Reimplemented from Integrator::Base::Mechanics< MODEL >.

Definition at line 163 of file TopOp.H.

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◆ Parse()

template<class MODEL >

static void Integrator::TopOp< MODEL >::Parse	(	TopOp< MODEL > &	value,
		IO::ParmParse &	pp
	)

inlinestatic

Definition at line 51 of file TopOp.H.

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◆ TagCellsForRefinement()

template<class MODEL >

void Integrator::TopOp< MODEL >::TagCellsForRefinement	(	int	lev,
		amrex::TagBoxArray &	a_tags,
		Set::Scalar	a_time,
		int	a_ngrow
	)

inlineoverridevirtual

Reimplemented from Integrator::Base::Mechanics< MODEL >.

Definition at line 188 of file TopOp.H.

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◆ UpdateModel()

template<class MODEL >

virtual void Integrator::TopOp< MODEL >::UpdateModel	(	int	a_step,
		Set::Scalar
	)

inlineoverridevirtual

Implements Integrator::Base::Mechanics< MODEL >.

Definition at line 104 of file TopOp.H.

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Field Documentation

◆ alpha

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::alpha = NAN

protected

Definition at line 234 of file TopOp.H.

◆ bc_psi

template<class MODEL >

BC::BC<Set::Scalar>* Integrator::TopOp< MODEL >::bc_psi = nullptr

protected

Definition at line 219 of file TopOp.H.

◆ beta

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::beta = NAN

protected

Definition at line 235 of file TopOp.H.

◆ gamma

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::gamma = NAN

protected

Definition at line 236 of file TopOp.H.

◆ ic_psi

template<class MODEL >

IC::IC* Integrator::TopOp< MODEL >::ic_psi = nullptr

protected

Definition at line 218 of file TopOp.H.

◆ L

template<class MODEL >

Numeric::Interpolator::Linear<Set::Scalar> Integrator::TopOp< MODEL >::L

protected

Definition at line 238 of file TopOp.H.

◆ lambda

template<class MODEL >

Numeric::Interpolator::Linear<Set::Scalar> Integrator::TopOp< MODEL >::lambda

protected

Definition at line 241 of file TopOp.H.

◆ m_eta_ref_threshold

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::m_eta_ref_threshold = NAN

protected

Definition at line 220 of file TopOp.H.

◆ model

template<class MODEL >

MODEL Integrator::TopOp< MODEL >::model

protected

Definition at line 217 of file TopOp.H.

◆ psi_old_mf

template<class MODEL >

Set::Field<Set::Scalar> Integrator::TopOp< MODEL >::psi_old_mf

protected

Definition at line 221 of file TopOp.H.

◆ volume

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::volume = NAN

protected

Definition at line 243 of file TopOp.H.

◆ volume0

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::volume0 = NAN

protected

Definition at line 239 of file TopOp.H.

◆ w_bndry

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::w_bndry = NAN

protected

Definition at line 245 of file TopOp.H.

◆ w_chem_potential

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::w_chem_potential = NAN

protected

Definition at line 244 of file TopOp.H.

◆ w_elastic

template<class MODEL >

Set::Scalar Integrator::TopOp< MODEL >::w_elastic = NAN

protected

Definition at line 246 of file TopOp.H.

The documentation for this class was generated from the following file:

src/Integrator/TopOp.H

Public Member Functions

Static Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

template<class MODEL> class Integrator::TopOp< MODEL >

Constructor & Destructor Documentation

◆ TopOp() [1/2]

◆ TopOp() [2/2]

Member Function Documentation

◆ Advance()

◆ Initialize()

◆ Integrate()

◆ Parse()

◆ TagCellsForRefinement()

◆ UpdateModel()

Field Documentation

◆ alpha

◆ bc_psi

◆ beta

◆ gamma

◆ ic_psi

◆ L

◆ lambda

◆ m_eta_ref_threshold

◆ model

◆ psi_old_mf

◆ volume

◆ volume0

◆ w_bndry

◆ w_chem_potential

◆ w_elastic

template<class MODEL>
class Integrator::TopOp< MODEL >