#include <PFC.H>

Inheritance diagram for Integrator::PFC:

Public Member Functions
	PFC ()

	~PFC ()

	PFC (IO::ParmParse &pp)

Public Member Functions inherited from Integrator::Integrator
	Integrator ()

virtual	~Integrator ()

void	InitData ()

void	Restart (std::string restartfile, bool a_node=false)

void	Evolve ()

void	SetFilename (std::string _plot_file)

std::string	GetFilename ()

void	regrid (int lbase, Set::Scalar time, bool initial=false) override

void	InitFromScratch (Set::Scalar time)

template<class T , int d>
ALAMO_SINGLE_DEFINITION void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string name, bool writeout, bool evolving, std::vector< std::string >)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving)

template<class T >
AMREX_ATTRIBUTE_WEAK void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving)

Static Public Member Functions
static void	Parse (PFC &value, IO::ParmParse &pp)

Protected Member Functions
void	Initialize (int lev) override

void	Advance (int lev, Set::Scalar time, Set::Scalar dt) override

void	TagCellsForRefinement (int lev, amrex::TagBoxArray &tags, amrex::Real time, int ngrow) override

Protected Member Functions inherited from Integrator::Integrator
virtual void	TimeStepBegin (Set::Scalar, int)

virtual void	TimeStepComplete (Set::Scalar, int)

virtual void	Integrate (int, Set::Scalar, int, const amrex::MFIter &, const amrex::Box &)

virtual void	Regrid (int, Set::Scalar)

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout, std::vector< std::string > suffix={})

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, int ncomp, std::string name, bool writeout, std::vector< std::string > suffix={})

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, int ncomp, int nghost, std::string name, bool writeout, std::vector< std::string > suffix={})

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout, std::vector< std::string > suffix={})

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving=true)

template<class T , int d>
void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string, bool writeout, bool evolving, std::vector< std::string > suffix={})

void	SetFinestLevel (const int a_finestlevel)

void	RegisterIntegratedVariable (Set::Scalar *integrated_variable, std::string name, bool extensive=true)

void	SetTimestep (Set::Scalar _timestep)

void	SetPlotInt (int plot_int)

void	SetThermoInt (int a_thermo_int)

void	SetThermoPlotInt (int a_thermo_plot_int)

void	SetStopTime (Set::Scalar a_stop_time)

void	DynamicTimestep_SyncTimeStep (int lev, Set::Scalar dt_min)

void	DynamicTimestep_Reset ()

void	DynamicTimestep_Update ()

void	IntegrateVariables (Set::Scalar cur_time, int step)

void	WritePlotFile (bool initial=false) const

void	WritePlotFile (std::string prefix, Set::Scalar time, int step) const

void	WritePlotFile (Set::Scalar time, amrex::Vector< int > iter, bool initial=false, std::string prefix="") const

Private Attributes
Set::Field< Set::Scalar >	eta_mf

Set::Field< Set::Scalar >	grad_chempot_mf

BC::BC< Set::Scalar > *	bc

IC::IC< Set::Scalar > *	ic

Set::Scalar	q0 = NAN

Set::Scalar	eps = NAN

Additional Inherited Members
Protected Attributes inherited from Integrator::Integrator
struct {

bool on = false

int verbose = -1

int nprevious = -1

Set::Scalar cfl = NAN

Set::Scalar min = NAN

Set::Scalar max = NAN

std::vector< Set::Scalar > dt_limit_min

std::vector< Set::Scalar > previous_timesteps

}	dynamictimestep

amrex::Vector< amrex::Real >	t_new

amrex::Vector< int >	istep

std::string	plot_file { "plt" }

amrex::Real	timestep = NAN

amrex::Vector< amrex::Real >	dt

amrex::Vector< int >	nsubsteps

bool	integrate_variables_before_advance = true

bool	integrate_variables_after_advance = false

struct {

int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::vector< std::string > > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

bool any = true

bool all = false

}	node

struct {

int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::vector< std::string > > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

bool any = true

bool all = false

}	cell

std::vector< BaseField * >	m_basefields

std::vector< BaseField * >	m_basefields_cell

BC::Nothing	bcnothing

struct {

int interval = -1

Set::Scalar dt = NAN

int plot_int = -1

Set::Scalar plot_dt = NAN

int number = 0

std::vector< Set::Scalar * > vars

std::vector< std::string > names

std::vector< bool > extensives

}	thermo

int	regrid_int = -1

int	base_regrid_int = -1

std::string	restart_file_cell = ""

std::string	restart_file_node = ""

struct {

int on = 0

std::vector< amrex::Box > box

}	explicitmesh

int	abort_on_nan = true

Detailed Description

Definition at line 44 of file PFC.H.

Constructor & Destructor Documentation

◆ PFC() [1/2]

Integrator::PFC::PFC ( )

Basic constructor (don't use)

Definition at line 16 of file PFC.cpp.

◆ ~PFC()

Integrator::PFC::~PFC ( )

Destroy pointers defined in Parse.

Definition at line 19 of file PFC.cpp.

◆ PFC() [2/2]

Integrator::PFC::PFC ( IO::ParmParse & pp )

inline

Use this constructor.

Definition at line 55 of file PFC.H.

Member Function Documentation

◆ Advance()

void Integrator::PFC::Advance	(	int	lev,
		Set::Scalar	time,
		Set::Scalar	dt
	)

overrideprotectedvirtual

Integrate eta over one timestep on lev.

Implements Integrator::Integrator.

Definition at line 123 of file PFC.cpp.

◆ Initialize()

void Integrator::PFC::Initialize ( int lev )

overrideprotectedvirtual

Set values in fields.

Implements Integrator::Integrator.

Definition at line 130 of file PFC.cpp.

◆ Parse()

void Integrator::PFC::Parse	(	PFC &	value,
		IO::ParmParse &	pp
	)

static

Scan input values and initialize fields.

Definition at line 25 of file PFC.cpp.

◆ TagCellsForRefinement()

void Integrator::PFC::TagCellsForRefinement	(	int	lev,
		amrex::TagBoxArray &	tags,
		amrex::Real	time,
		int	ngrow
	)

overrideprotectedvirtual

Mark any cells that need to be refined.

Implements Integrator::Integrator.

Definition at line 138 of file PFC.cpp.

Field Documentation

◆ bc

BC::BC<Set::Scalar>* Integrator::PFC::bc

private

Field to calculate FFT of nonlinar part.

Definition at line 75 of file PFC.H.

◆ eps

Set::Scalar Integrator::PFC::eps = NAN

private

Definition at line 79 of file PFC.H.

◆ eta_mf

Set::Field<Set::Scalar> Integrator::PFC::eta_mf

private

Definition at line 72 of file PFC.H.

◆ grad_chempot_mf

Set::Field<Set::Scalar> Integrator::PFC::grad_chempot_mf

private

Order parameter field.

Definition at line 73 of file PFC.H.

◆ ic

IC::IC<Set::Scalar>* Integrator::PFC::ic

private

eta's bc object

Definition at line 76 of file PFC.H.

◆ q0

Set::Scalar Integrator::PFC::q0 = NAN

private

eta's ic object

Definition at line 78 of file PFC.H.

The documentation for this class was generated from the following files:

src/Integrator/PFC.H
src/Integrator/PFC.cpp

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ PFC() [1/2]

◆ ~PFC()

◆ PFC() [2/2]

Member Function Documentation

◆ Advance()

◆ Initialize()

◆ Parse()

◆ TagCellsForRefinement()

Field Documentation

◆ bc

◆ eps

◆ eta_mf

◆ grad_chempot_mf

◆ ic

◆ q0