#include <Dendrite.H>

Inheritance diagram for Integrator::Dendrite:

Public Member Functions
	Dendrite ()

	Dendrite (IO::ParmParse &pp)

	~Dendrite ()

Public Member Functions inherited from Integrator::Integrator
	Integrator ()

virtual	~Integrator ()

void	InitData ()

void	Restart (std::string restartfile, bool a_node=false)

void	Evolve ()

void	SetFilename (std::string _plot_file)

std::string	GetFilename ()

void	regrid (int lbase, Set::Scalar time, bool initial=false) override

void	InitFromScratch (Set::Scalar time)

template<class T , int d>
ALAMO_SINGLE_DEFINITION void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string name, bool writeout, bool evolving, std::vector< std::string >)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving)

template<class T >
ALAMO_SINGLE_DEFINITION void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving)

template<class T >
AMREX_ATTRIBUTE_WEAK void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving)

Static Public Member Functions
static void	Parse (Dendrite &value, IO::ParmParse &pp)

Static Public Attributes
static constexpr const char *	name = "dendrite"

Protected Member Functions
void	Initialize (int lev)

void	Advance (int lev, Set::Scalar, Set::Scalar dt)

void	TagCellsForRefinement (int lev, amrex::TagBoxArray &a_tags, Set::Scalar, int)

Protected Member Functions inherited from Integrator::Integrator
virtual void	TimeStepBegin (Set::Scalar, int)

virtual void	TimeStepComplete (Set::Scalar, int)

virtual void	Integrate (int, Set::Scalar, int, const amrex::MFIter &, const amrex::Box &)

virtual void	Regrid (int, Set::Scalar)

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout, bool evolving=true, std::vector< std::string > suffix={})

void	RegisterNewFab (Set::Field< Set::Scalar > &new_fab, int ncomp, std::string name, bool writeout, bool evolving=true, std::vector< std::string > suffix={})

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, int ncomp, int nghost, std::string name, bool writeout, bool evolving=true, std::vector< std::string > suffix={})

void	RegisterNodalFab (Set::Field< Set::Scalar > &new_fab, BC::BC< Set::Scalar > *new_bc, int ncomp, int nghost, std::string name, bool writeout, bool evolving=true, std::vector< std::string > suffix={})

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, std::string a_name, bool evolving=true)

template<class T >
void	RegisterGeneralFab (Set::Field< T > &new_fab, int ncomp, int nghost, bool writeout, std::string a_name, bool evolving=true)

template<class T , int d>
void	AddField (Set::Field< T > &new_field, BC::BC< T > *new_bc, int ncomp, int nghost, std::string, bool writeout, bool evolving, std::vector< std::string > suffix={})

void	SetFinestLevel (const int a_finestlevel)

void	RegisterIntegratedVariable (Set::Scalar *integrated_variable, std::string name, bool extensive=true)

void	SetTimestep (Set::Scalar _timestep)

void	SetPlotInt (int plot_int)

void	SetThermoInt (int a_thermo_int)

void	SetThermoPlotInt (int a_thermo_plot_int)

void	SetStopTime (Set::Scalar a_stop_time)

void	DynamicTimestep_SyncTimeStep (int lev, Set::Scalar dt_min)

void	DynamicTimestep_Reset ()

void	DynamicTimestep_Update ()

void	IntegrateVariables (Set::Scalar cur_time, int step)

void	WritePlotFile (bool initial=false) const

void	WritePlotFile (std::string prefix, Set::Scalar time, int step) const

void	WritePlotFile (Set::Scalar time, amrex::Vector< int > iter, bool initial=false, std::string prefix="") const

Protected Attributes
Set::Field< Set::Scalar >	temp_mf

Set::Field< Set::Scalar >	temp_old_mf

Set::Field< Set::Scalar >	phi_mf

Set::Field< Set::Scalar >	phi_old_mf

Set::Field< Set::Scalar > &	eta_mf = phi_mf

Set::Field< Set::Scalar > &	eta_old_mf = phi_old_mf

Protected Attributes inherited from Integrator::Integrator
struct {

bool on = false

int verbose = -1

int nprevious = -1

Set::Scalar cfl = NAN

Set::Scalar min = NAN

Set::Scalar max = NAN

std::vector< Set::Scalar > dt_limit_min

std::vector< Set::Scalar > previous_timesteps

}	dynamictimestep

amrex::Vector< amrex::Real >	t_new

amrex::Vector< int >	istep

std::string	plot_file { "plt" }

amrex::Real	timestep = NAN

amrex::Vector< amrex::Real >	dt

amrex::Vector< int >	nsubsteps

bool	integrate_variables_before_advance = true

bool	integrate_variables_after_advance = false

struct {

int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::vector< std::string > > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

std::vector< bool > evolving_array

bool any = true

bool all = false

}	node

struct {

int number_of_fabs = 0

std::vector< Set::Field< Set::Scalar > * > fab_array

std::vector< int > ncomp_array

std::vector< int > nghost_array

std::vector< std::vector< std::string > > name_array

std::vector< BC::BC< Set::Scalar > * > physbc_array

std::vector< bool > writeout_array

std::vector< bool > evolving_array

bool any = true

bool all = false

}	cell

std::vector< BaseField * >	m_basefields

std::vector< BaseField * >	m_basefields_cell

BC::Nothing	bcnothing

struct {

int interval = -1

Set::Scalar dt = NAN

int plot_int = -1

Set::Scalar plot_dt = NAN

int number = 0

std::vector< Set::Scalar * > vars

std::vector< std::string > names

std::vector< bool > extensives

}	thermo

int	regrid_int = -1

int	base_regrid_int = -1

std::string	restart_file_cell = ""

std::string	restart_file_node = ""

struct {

int on = 0

std::vector< amrex::Box > box

}	explicitmesh

int	abort_on_nan = true

Private Attributes
int	number_of_components = 1

int	number_of_ghost_cells = 1

Set::Scalar	alpha

Set::Scalar	delta

Set::Scalar	gamma

Set::Scalar	diffusion =NAN

Set::Scalar	eps

Set::Scalar	tau

Set::Scalar	theta = NAN

Set::Matrix	R = Set::Matrix::Identity()

Set::Scalar	refinement_threshold_temp = NAN

Set::Scalar	refinement_threshold_phi = NAN

IC::IC< Set::Scalar > *	ic_temp

IC::IC< Set::Scalar > *	ic_phi

BC::BC< Set::Scalar > *	bc_temp

BC::BC< Set::Scalar > *	bc_phi

Detailed Description

Definition at line 29 of file Dendrite.H.

Constructor & Destructor Documentation

◆ Dendrite() [1/2]

Integrator::Dendrite::Dendrite ( )

inline

Definition at line 35 of file Dendrite.H.

◆ Dendrite() [2/2]

Integrator::Dendrite::Dendrite ( IO::ParmParse & pp )

inline

Definition at line 39 of file Dendrite.H.

◆ ~Dendrite()

Integrator::Dendrite::~Dendrite ( )

inline

Definition at line 44 of file Dendrite.H.

Member Function Documentation

◆ Advance()

void Integrator::Dendrite::Advance	(	int	lev,
		Set::Scalar	,
		Set::Scalar	dt
	)

inlineprotectedvirtual

Implements Integrator::Integrator.

Definition at line 100 of file Dendrite.H.

◆ Initialize()

void Integrator::Dendrite::Initialize ( int lev )

inlineprotectedvirtual

Implements Integrator::Integrator.

Definition at line 90 of file Dendrite.H.

◆ Parse()

static void Integrator::Dendrite::Parse	(	Dendrite &	value,
		IO::ParmParse &	pp
	)

inlinestatic

Definition at line 52 of file Dendrite.H.

◆ TagCellsForRefinement()

void Integrator::Dendrite::TagCellsForRefinement	(	int	lev,
		amrex::TagBoxArray &	a_tags,
		Set::Scalar	,
		int
	)

inlineprotectedvirtual

Implements Integrator::Integrator.

Definition at line 167 of file Dendrite.H.

Field Documentation

◆ alpha

Set::Scalar Integrator::Dendrite::alpha

private

Definition at line 214 of file Dendrite.H.

◆ bc_phi

BC::BC<Set::Scalar> * Integrator::Dendrite::bc_phi

private

Definition at line 225 of file Dendrite.H.

◆ bc_temp

BC::BC<Set::Scalar>* Integrator::Dendrite::bc_temp

private

Definition at line 225 of file Dendrite.H.

◆ delta

Set::Scalar Integrator::Dendrite::delta

private

Definition at line 214 of file Dendrite.H.

◆ diffusion

Set::Scalar Integrator::Dendrite::diffusion =NAN

private

Definition at line 214 of file Dendrite.H.

◆ eps

Set::Scalar Integrator::Dendrite::eps

private

Definition at line 216 of file Dendrite.H.

◆ eta_mf

Set::Field<Set::Scalar>& Integrator::Dendrite::eta_mf = phi_mf

protected

Definition at line 206 of file Dendrite.H.

◆ eta_old_mf

Set::Field<Set::Scalar>& Integrator::Dendrite::eta_old_mf = phi_old_mf

protected

Definition at line 207 of file Dendrite.H.

◆ gamma

Set::Scalar Integrator::Dendrite::gamma

private

Definition at line 214 of file Dendrite.H.

◆ ic_phi

IC::IC<Set::Scalar> * Integrator::Dendrite::ic_phi

private

Definition at line 224 of file Dendrite.H.

◆ ic_temp

IC::IC<Set::Scalar>* Integrator::Dendrite::ic_temp

private

Definition at line 224 of file Dendrite.H.

◆ name

constexpr const char* Integrator::Dendrite::name = "dendrite"

staticconstexpr

Definition at line 32 of file Dendrite.H.

◆ number_of_components

int Integrator::Dendrite::number_of_components = 1

private

Definition at line 210 of file Dendrite.H.

◆ number_of_ghost_cells

int Integrator::Dendrite::number_of_ghost_cells = 1

private

Definition at line 211 of file Dendrite.H.

◆ phi_mf

Set::Field<Set::Scalar> Integrator::Dendrite::phi_mf

protected

Definition at line 203 of file Dendrite.H.

◆ phi_old_mf

Set::Field<Set::Scalar> Integrator::Dendrite::phi_old_mf

protected

Definition at line 204 of file Dendrite.H.

◆ R

Set::Matrix Integrator::Dendrite::R = Set::Matrix::Identity()

private

Definition at line 219 of file Dendrite.H.

◆ refinement_threshold_phi

Set::Scalar Integrator::Dendrite::refinement_threshold_phi = NAN

private

Definition at line 222 of file Dendrite.H.

◆ refinement_threshold_temp

Set::Scalar Integrator::Dendrite::refinement_threshold_temp = NAN

private

Definition at line 221 of file Dendrite.H.

◆ tau

Set::Scalar Integrator::Dendrite::tau

private

Definition at line 216 of file Dendrite.H.

◆ temp_mf

Set::Field<Set::Scalar> Integrator::Dendrite::temp_mf

protected

Definition at line 201 of file Dendrite.H.

◆ temp_old_mf

Set::Field<Set::Scalar> Integrator::Dendrite::temp_old_mf

protected

Definition at line 202 of file Dendrite.H.

◆ theta

Set::Scalar Integrator::Dendrite::theta = NAN

private

Definition at line 218 of file Dendrite.H.

The documentation for this class was generated from the following file:

src/Integrator/Dendrite.H

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ Dendrite() [1/2]

◆ Dendrite() [2/2]

◆ ~Dendrite()

Member Function Documentation

◆ Advance()

◆ Initialize()

◆ Parse()

◆ TagCellsForRefinement()

Field Documentation

◆ alpha

◆ bc_phi

◆ bc_temp

◆ delta

◆ diffusion

◆ eps

◆ eta_mf

◆ eta_old_mf

◆ gamma

◆ ic_phi

◆ ic_temp

◆ name

◆ number_of_components

◆ number_of_ghost_cells

◆ phi_mf

◆ phi_old_mf

◆ R

◆ refinement_threshold_phi

◆ refinement_threshold_temp

◆ tau

◆ temp_mf

◆ temp_old_mf

◆ theta