Alamo
Operator.cpp
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1 
2 #include <AMReX_MLNodeLinOp.H>
3 #include <AMReX_MLCellLinOp.H>
4 #include <AMReX_MLNodeLap_K.H>
5 #include <AMReX_MultiFabUtil.H>
6 #include "Util/Color.H"
7 #include "Set/Set.H"
8 #include "Operator.H"
9 
10 using namespace amrex;
11 namespace Operator {
12 
13 // constexpr amrex::IntVect AMREX_D_DECL(Operator<Grid::Node>::dx,Operator<Grid::Node>::dy,Operator<Grid::Node>::dz);
14 constexpr amrex::IntVect AMREX_D_DECL(Operator<Grid::Cell>::dx, Operator<Grid::Cell>::dy, Operator<Grid::Cell>::dz);
15 
16 void Operator<Grid::Node>::Diagonal(bool recompute)
17 {
18  BL_PROFILE(Color::FG::Yellow + "Operator::Diagonal()" + Color::Reset);
19  if (!recompute && m_diagonal_computed) return;
20  m_diagonal_computed = true;
21 
22  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
23  {
24  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
25  {
26  Diagonal(amrlev, mglev, *m_diag[amrlev][mglev]);
27  }
28  }
29 }
30 
31 void Operator<Grid::Node>::Diagonal(int amrlev, int mglev, amrex::MultiFab& diag)
32 {
33  BL_PROFILE("Operator::Diagonal()");
34  //Util::Message(INFO);
35 
36  int ncomp = diag.nComp();
37  int nghost = 0;
38 
39  int sep = 2;
40  int num = AMREX_D_TERM(sep, *sep, *sep);
41  int cntr = 0;
42 
43  amrex::MultiFab x(m_diag[amrlev][mglev]->boxArray(), m_diag[amrlev][mglev]->DistributionMap(), ncomp, nghost);
44  amrex::MultiFab Ax(m_diag[amrlev][mglev]->boxArray(), m_diag[amrlev][mglev]->DistributionMap(), ncomp, nghost);
45 
46  for (MFIter mfi(x, false); mfi.isValid(); ++mfi)
47  {
48  const Box& bx = mfi.validbox();
49  amrex::FArrayBox& diagfab = diag[mfi];
50  amrex::FArrayBox& xfab = x[mfi];
51  amrex::FArrayBox& Axfab = Ax[mfi];
52 
53  diagfab.setVal(0.0);
54 
55  for (int i = 0; i < num; i++)
56  {
57  for (int n = 0; n < ncomp; n++)
58  {
59  xfab.setVal(0.0);
60  Axfab.setVal(0.0);
61 
62  //BL_PROFILE_VAR("Operator::Part1", part1);
63  AMREX_D_TERM(for (int m1 = bx.loVect()[0]; m1 <= bx.hiVect()[0]; m1++),
64  for (int m2 = bx.loVect()[1]; m2 <= bx.hiVect()[1]; m2++),
65  for (int m3 = bx.loVect()[2]; m3 <= bx.hiVect()[2]; m3++))
66  {
67  amrex::IntVect m(AMREX_D_DECL(m1, m2, m3));
68 
69  if (m1 % sep == i / sep && m2 % sep == i % sep) xfab(m, n) = 1.0;
70  else xfab(m, n) = 0.0;
71  }
72  //BL_PROFILE_VAR_STOP(part1);
73 
74  BL_PROFILE_VAR("Operator::Part2", part2);
75  Util::Message(INFO, "Calling fapply...", cntr++);
76  Fapply(amrlev, mglev, Ax, x);
77  BL_PROFILE_VAR_STOP(part2);
78 
79  //BL_PROFILE_VAR("Operator::Part3", part3);
80  Axfab.mult(xfab, n, n, 1);
81  diagfab.plus(Axfab, n, n, 1);
82  //BL_PROFILE_VAR_STOP(part3);
83  }
84  }
85  }
86 }
87 
88 void Operator<Grid::Node>::Fsmooth(int amrlev, int mglev, amrex::MultiFab& x, const amrex::MultiFab& b) const
89 {
90  BL_PROFILE("Operator::Fsmooth()");
91 
92  amrex::Box domain(m_geom[amrlev][mglev].Domain());
93 
94  int ncomp = b.nComp();
95  int nghost = 2; //b.nGrow();
96 
97 
98  amrex::MultiFab Ax(x.boxArray(), x.DistributionMap(), ncomp, nghost);
99  amrex::MultiFab Dx(x.boxArray(), x.DistributionMap(), ncomp, nghost);
100  amrex::MultiFab Rx(x.boxArray(), x.DistributionMap(), ncomp, nghost);
101 
102  if (!m_diagonal_computed) Util::Abort(INFO, "Operator::Diagonal() must be called before using Fsmooth");
103 
104  // This is a JACOBI iteration, not Gauss-Seidel.
105  // So we need to do twice the number of iterations to get the same behavior as GS.
106  for (int ctr = 0; ctr < 2; ctr++)
107  {
108  Fapply(amrlev, mglev, Ax, x); // find Ax
109 
110  amrex::MultiFab::Copy(Dx, x, 0, 0, ncomp, nghost); // Dx = x
111  amrex::MultiFab::Multiply(Dx, *m_diag[amrlev][mglev], 0, 0, ncomp, nghost); // Dx *= diag (Dx = x*diag)
112 
113  amrex::MultiFab::Copy(Rx, Ax, 0, 0, ncomp, nghost); // Rx = Ax
114  amrex::MultiFab::Subtract(Rx, Dx, 0, 0, ncomp, nghost); // Rx -= Dx (Rx = Ax - Dx)
115 
116  for (MFIter mfi(x, false); mfi.isValid(); ++mfi)
117  {
118  const Box& bx = mfi.validbox();
119  amrex::FArrayBox& xfab = x[mfi];
120  const amrex::FArrayBox& bfab = b[mfi];
121  //const amrex::FArrayBox &Axfab = Ax[mfi];
122  const amrex::FArrayBox& Rxfab = Rx[mfi];
123  const amrex::FArrayBox& diagfab = (*m_diag[amrlev][mglev])[mfi];
124 
125  for (int n = 0; n < ncomp; n++)
126  {
127  AMREX_D_TERM(for (int m1 = bx.loVect()[0] - 2; m1 <= bx.hiVect()[0] + 2; m1++),
128  for (int m2 = bx.loVect()[1] - 2; m2 <= bx.hiVect()[1] + 2; m2++),
129  for (int m3 = bx.loVect()[2] - 2; m3 <= bx.hiVect()[2] + 2; m3++))
130  {
131 
132  amrex::IntVect m(AMREX_D_DECL(m1, m2, m3));
133 
134  // Skip ghost cells outside problem domain
135  if (AMREX_D_TERM(m[0] < domain.loVect()[0], ||
136  m[1] < domain.loVect()[1], ||
137  m[2] < domain.loVect()[2])) continue;
138  if (AMREX_D_TERM(m[0] > domain.hiVect()[0] + 1, ||
139  m[1] > domain.hiVect()[1] + 1, ||
140  m[2] > domain.hiVect()[2] + 1)) continue;
141 
142  if (AMREX_D_TERM(m[0] == bx.loVect()[0] - nghost || m[0] == bx.hiVect()[0] + nghost, ||
143  m[1] == bx.loVect()[1] - nghost || m[1] == bx.hiVect()[1] + nghost, ||
144  m[2] == bx.loVect()[2] - nghost || m[2] == bx.hiVect()[2] + nghost))
145  {
146  xfab(m, n) = 0.0;
147  continue;
148  }
149 
150  //xfab(m,n) = xfab(m,n) + omega*(bfab(m,n) - Axfab(m,n))/diagfab(m,n);
151  xfab(m, n) = (1. - m_omega) * xfab(m, n) + m_omega * (bfab(m, n) - Rxfab(m, n)) / diagfab(m, n);
152  }
153  }
154  }
155  }
156  amrex::Geometry geom = m_geom[amrlev][mglev];
157  realFillBoundary(x, geom);
158  nodalSync(amrlev, mglev, x);
159 }
160 
161 void Operator<Grid::Node>::normalize(int amrlev, int mglev, MultiFab& a_x) const
162 {
163  BL_PROFILE("Operator::normalize()");
164  amrex::Box domain(m_geom[amrlev][mglev].Domain());
165  domain.convert(amrex::IntVect::TheNodeVector());
166 
167  int ncomp = getNComp();
168  int nghost = 1; //x.nGrow();
169 
170  if (!m_diagonal_computed)
171  Util::Abort(INFO, "Operator::Diagonal() must be called before using normalize");
172 
173  for (MFIter mfi(a_x, amrex::TilingIfNotGPU()); mfi.isValid(); ++mfi)
174  {
175 
176  Box bx = mfi.tilebox();
177  bx.grow(nghost);
178  bx = bx & domain;
179 
180  amrex::Array4<amrex::Real> const& x = a_x.array(mfi);
181  amrex::Array4<const amrex::Real> const& diag = m_diag[amrlev][mglev]->array(mfi);
182 
183  for (int n = 0; n < ncomp; n++)
184  {
185  amrex::ParallelFor(bx, [=] AMREX_GPU_DEVICE(int i, int j, int k) {
186 
187  x(i, j, k) /= diag(i, j, k);
188 
189  });
190  }
191  }
192 }
193 
194 Operator<Grid::Node>::Operator(const Vector<Geometry>& a_geom,
195  const Vector<BoxArray>& a_grids,
196  const Vector<DistributionMapping>& a_dmap,
197  const LPInfo& a_info,
198  const Vector<FabFactory<FArrayBox> const*>& a_factory)
199 {
200  BL_PROFILE("Operator::Operator()");
201  Util::Message(INFO);
202 
203  if (!(a_grids[0].ixType() == amrex::IndexType::TheNodeType()))
204  Util::Abort(INFO, "Operator must be defined using CELL CENTERED boxarrays.");
205 
206  define(a_geom, a_grids, a_dmap, a_info, a_factory);
207 }
208 
209 Operator<Grid::Node>::~Operator()
210 {}
211 
212 void Operator<Grid::Node>::define(const Vector<Geometry>& a_geom,
213  const Vector<BoxArray>& a_grids,
214  const Vector<DistributionMapping>& a_dmap,
215  const LPInfo& a_info,
216  const Vector<FabFactory<FArrayBox> const*>& a_factory)
217 {
218  BL_PROFILE("Operator::~Operator()");
219 
220  // Make sure we're not trying to parallelize in vain.
221  if (amrex::ParallelDescriptor::NProcs() > a_grids[0].size())
222  {
223  Util::Warning(INFO, "There are more processors than there are boxes in the amrlev=0 boxarray!!\n",
224  "(NProcs = ", amrex::ParallelDescriptor::NProcs(), ", a_grids[0].size() = ", a_grids[0].size(), ")\n",
225  "You should decrease max_grid_size or you will not get proper scaling!");
226  }
227 
228  // This makes sure grids are node-centered;
229  Vector<BoxArray> cc_grids = a_grids;
230  for (auto& ba : cc_grids) {
231  ba.enclosedCells();
232  }
233 
234  MLNodeLinOp::define(a_geom, a_grids, a_dmap, a_info, a_factory);
235 
236  int nghost = 2;
237  // Resize the multifab containing the operator diagonal
238  m_diag.resize(m_num_amr_levels);
239  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
240  {
241  m_diag[amrlev].resize(m_num_mg_levels[amrlev]);
242 
243  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
244  {
245  m_diag[amrlev][mglev].reset(new MultiFab(amrex::convert(m_grids[amrlev][mglev], amrex::IntVect::TheNodeVector()),
246  m_dmap[amrlev][mglev], getNComp(), nghost));
247  }
248  }
249 
250  // We need to instantiate the m_lobc objects.
251  // WE DO NOT USE THEM - our BCs are implemented differently.
252  // But they need to be the right size or the code will segfault.
253  m_lobc.resize(getNComp(), { {AMREX_D_DECL(BCType::bogus,BCType::bogus,BCType::bogus)} });
254  m_hibc.resize(getNComp(), { {AMREX_D_DECL(BCType::bogus,BCType::bogus,BCType::bogus)} });
255 }
256 
257 void Operator<Grid::Node>::fixUpResidualMask(int amrlev, iMultiFab& resmsk)
258 {
259  BL_PROFILE("Operator::fixUpResidualMask()");
260 
261  if (!m_masks_built) buildMasks();
262 
263  const iMultiFab& cfmask = *m_nd_fine_mask[amrlev];
264 
265 #ifdef _OPENMP
266 #pragma omp parallel if (Gpu::notInLaunchRegion())
267 #endif
268  for (MFIter mfi(resmsk, TilingIfNotGPU()); mfi.isValid(); ++mfi)
269  {
270  const Box& bx = mfi.tilebox();
271  Array4<int> const& rmsk = resmsk.array(mfi);
272  Array4<int const> const& fmsk = cfmask.const_array(mfi);
273  AMREX_HOST_DEVICE_PARALLEL_FOR_3D(bx, i, j, k,
274  {
275  if (fmsk(i,j,k) == amrex::nodelap_detail::crse_fine_node) rmsk(i,j,k) = 1;
276  });
277  }
278 }
279 
280 void Operator<Grid::Node>::prepareForSolve()
281 {
282  BL_PROFILE("Operator::prepareForSolve()");
283  MLNodeLinOp::prepareForSolve();
284  buildMasks();
285  averageDownCoeffs();
286  Diagonal(true);
287 }
288 
289 void Operator<Grid::Node>::restriction(int amrlev, int cmglev, MultiFab& crse, MultiFab& fine) const
290 {
291  BL_PROFILE("Operator::restriction()");
292 
293  applyBC(amrlev, cmglev - 1, fine, BCMode::Homogeneous, StateMode::Solution);
294 
295  amrex::Box cdomain = m_geom[amrlev][cmglev].Domain();
296  cdomain.convert(amrex::IntVect::TheNodeVector());
297 
298  bool need_parallel_copy = !amrex::isMFIterSafe(crse, fine);
299  MultiFab cfine;
300  if (need_parallel_copy) {
301  const BoxArray& ba = amrex::coarsen(fine.boxArray(), 2);
302  cfine.define(ba, fine.DistributionMap(), fine.nComp(), fine.nGrow());
303  }
304 
305  MultiFab* pcrse = (need_parallel_copy) ? &cfine : &crse;
306 
307  for (MFIter mfi(*pcrse, amrex::TilingIfNotGPU()); mfi.isValid(); ++mfi)
308  {
309  const Box& bx = mfi.tilebox();
310 
311  amrex::Array4<const amrex::Real> const& fdata = fine.array(mfi);
312  amrex::Array4<amrex::Real> const& cdata = pcrse->array(mfi);
313 
314  const Dim3 lo = amrex::lbound(cdomain), hi = amrex::ubound(cdomain);
315 
316 
317  for (int n = 0; n < crse.nComp(); n++)
318  {
319  // I,J,K == coarse coordinates
320  // i,j,k == fine coordinates
321  amrex::ParallelFor(bx, [=] AMREX_GPU_DEVICE(int I, int J, int K) {
322  int i = 2 * I, j = 2 * J, k = 2 * K;
323 
324  if ((I == lo.x || I == hi.x) &&
325  (J == lo.y || J == hi.y) &&
326  (K == lo.z || K == hi.z)) // Corner
327  {
328  cdata(I, J, K, n) = fdata(i, j, k, n);
329  }
330  else if ((J == lo.y || J == hi.y) &&
331  (K == lo.z || K == hi.z)) // X edge
332  {
333  cdata(I, J, K, n) = 0.25 * fdata(i - 1, j, k, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i + 1, j, k, n);
334  }
335  else if ((K == lo.z || K == hi.z) &&
336  (I == lo.x || I == hi.x)) // Y edge
337  {
338  cdata(I, J, K, n) = 0.25 * fdata(i, j - 1, k, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i, j + 1, k, n);
339  }
340  else if ((I == lo.x || I == hi.x) &&
341  (J == lo.y || J == hi.y)) // Z edge
342  {
343  cdata(I, J, K, n) = 0.25 * fdata(i, j, k - 1, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i, j, k + 1, n);
344  }
345  else if (I == lo.x || I == hi.x) // X face
346  {
347  cdata(I, J, K, n) =
348  (+fdata(i, j - 1, k - 1, n) + 2.0 * fdata(i, j, k - 1, n) + fdata(i, j + 1, k - 1, n)
349  + 2.0 * fdata(i, j - 1, k, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i, j + 1, k, n)
350  + fdata(i, j - 1, k + 1, n) + 2.0 * fdata(i, j, k + 1, n) + fdata(i, j + 1, k + 1, n)) / 16.0;
351  }
352  else if (J == lo.y || J == hi.y) // Y face
353  {
354  cdata(I, J, K, n) =
355  (+fdata(i - 1, j, k - 1, n) + 2.0 * fdata(i - 1, j, k, n) + fdata(i - 1, j, k + 1, n)
356  + 2.0 * fdata(i, j, k - 1, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i, j, k + 1, n)
357  + fdata(i + 1, j, k - 1, n) + 2.0 * fdata(i + 1, j, k, n) + fdata(i + 1, j, k + 1, n)) / 16.0;
358  }
359  else if (K == lo.z || K == hi.z) // Z face
360  {
361  cdata(I, J, K, n) =
362  (+fdata(i - 1, j - 1, k, n) + 2.0 * fdata(i, j - 1, k, n) + fdata(i + 1, j - 1, k, n)
363  + 2.0 * fdata(i - 1, j, k, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i + 1, j, k, n)
364  + fdata(i - 1, j + 1, k, n) + 2.0 * fdata(i, j + 1, k, n) + fdata(i + 1, j + 1, k, n)) / 16.0;
365  }
366  else // Interior
367  cdata(I, J, K, n) =
368  (fdata(i - 1, j - 1, k - 1, n) + fdata(i - 1, j - 1, k + 1, n) + fdata(i - 1, j + 1, k - 1, n) + fdata(i - 1, j + 1, k + 1, n) +
369  fdata(i + 1, j - 1, k - 1, n) + fdata(i + 1, j - 1, k + 1, n) + fdata(i + 1, j + 1, k - 1, n) + fdata(i + 1, j + 1, k + 1, n)) / 64.0
370  +
371  (fdata(i, j - 1, k - 1, n) + fdata(i, j - 1, k + 1, n) + fdata(i, j + 1, k - 1, n) + fdata(i, j + 1, k + 1, n) +
372  fdata(i - 1, j, k - 1, n) + fdata(i + 1, j, k - 1, n) + fdata(i - 1, j, k + 1, n) + fdata(i + 1, j, k + 1, n) +
373  fdata(i - 1, j - 1, k, n) + fdata(i - 1, j + 1, k, n) + fdata(i + 1, j - 1, k, n) + fdata(i + 1, j + 1, k, n)) / 32.0
374  +
375  (fdata(i - 1, j, k, n) + fdata(i, j - 1, k, n) + fdata(i, j, k - 1, n) +
376  fdata(i + 1, j, k, n) + fdata(i, j + 1, k, n) + fdata(i, j, k + 1, n)) / 16.0
377  +
378  fdata(i, j, k, n) / 8.0;
379  });
380  }
381  }
382 
383  if (need_parallel_copy) {
384  crse.ParallelCopy(cfine);
385  }
386 
387  amrex::Geometry geom = m_geom[amrlev][cmglev];
388  realFillBoundary(crse, geom);
389  nodalSync(amrlev, cmglev, crse);
390 }
391 
392 void Operator<Grid::Node>::interpolation(int amrlev, int fmglev, MultiFab& fine, const MultiFab& crse) const
393 {
394  BL_PROFILE("Operator::interpolation()");
395  //int nghost = getNGrow();
396  amrex::Box fdomain = m_geom[amrlev][fmglev].Domain(); fdomain.convert(amrex::IntVect::TheNodeVector());
397 
398  bool need_parallel_copy = !amrex::isMFIterSafe(crse, fine);
399  MultiFab cfine;
400  const MultiFab* cmf = &crse;
401  if (need_parallel_copy) {
402  const BoxArray& ba = amrex::coarsen(fine.boxArray(), 2);
403  cfine.define(ba, fine.DistributionMap(), crse.nComp(), crse.nGrow());
404  cfine.ParallelCopy(crse);
405  cmf = &cfine;
406  }
407 
408  for (MFIter mfi(fine, false); mfi.isValid(); ++mfi)
409  {
410  const Box& fine_bx = mfi.validbox() & fdomain;
411  const Box& course_bx = amrex::coarsen(fine_bx, 2);
412  const Box& tmpbx = amrex::refine(course_bx, 2);
413  FArrayBox tmpfab;
414  tmpfab.resize(tmpbx, fine.nComp());
415  tmpfab.setVal(0.0);
416  const amrex::FArrayBox& crsefab = (*cmf)[mfi];
417 
418  amrex::Array4<const amrex::Real> const& cdata = crsefab.const_array();
419  amrex::Array4<amrex::Real> const& fdata = tmpfab.array();
420 
421  for (int n = 0; n < crse.nComp(); n++)
422  {
423  // I,J,K == coarse coordinates
424  // i,j,k == fine coordinates
425  amrex::ParallelFor(fine_bx, [=] AMREX_GPU_DEVICE(int i, int j, int k) {
426 
427  int I = i / 2, J = j / 2, K = k / 2;
428 
429  if (i % 2 == 0 && j % 2 == 0 && k % 2 == 0) // Coincident
430  fdata(i, j, k, n) = cdata(I, J, K, n);
431  else if (j % 2 == 0 && k % 2 == 0) // X Edge
432  fdata(i, j, k, n) = 0.5 * (cdata(I, J, K, n) + cdata(I + 1, J, K, n));
433  else if (k % 2 == 0 && i % 2 == 0) // Y Edge
434  fdata(i, j, k, n) = 0.5 * (cdata(I, J, K, n) + cdata(I, J + 1, K, n));
435  else if (i % 2 == 0 && j % 2 == 0) // Z Edge
436  fdata(i, j, k, n) = 0.5 * (cdata(I, J, K, n) + cdata(I, J, K + 1, n));
437  else if (i % 2 == 0) // X Face
438  fdata(i, j, k, n) = 0.25 * (cdata(I, J, K, n) + cdata(I, J + 1, K, n) +
439  cdata(I, J, K + 1, n) + cdata(I, J + 1, K + 1, n));
440  else if (j % 2 == 0) // Y Face
441  fdata(i, j, k, n) = 0.25 * (cdata(I, J, K, n) + cdata(I, J, K + 1, n) +
442  cdata(I + 1, J, K, n) + cdata(I + 1, J, K + 1, n));
443  else if (k % 2 == 0) // Z Face
444  fdata(i, j, k, n) = 0.25 * (cdata(I, J, K, n) + cdata(I + 1, J, K, n) +
445  cdata(I, J + 1, K, n) + cdata(I + 1, J + 1, K, n));
446  else // Center
447  fdata(i, j, k, n) = 0.125 * (cdata(I, J, K, n) +
448  cdata(I + 1, J, K, n) + cdata(I, J + 1, K, n) + cdata(I, J, K + 1, n) +
449  cdata(I, J + 1, K + 1, n) + cdata(I + 1, J, K + 1, n) + cdata(I + 1, J + 1, K, n) +
450  cdata(I + 1, J + 1, K + 1, n));
451 
452  });
453  }
454  fine[mfi].plus(tmpfab, fine_bx, fine_bx, 0, 0, fine.nComp());
455  }
456 
457  amrex::Geometry geom = m_geom[amrlev][fmglev];
458  realFillBoundary(fine, geom);
459  nodalSync(amrlev, fmglev, fine);
460 }
461 
462 void Operator<Grid::Node>::averageDownSolutionRHS(int camrlev, MultiFab& crse_sol, MultiFab& /*crse_rhs*/,
463  const MultiFab& fine_sol, const MultiFab& /*fine_rhs*/)
464 {
465  BL_PROFILE("Operator::averageDownSolutionRHS()");
466  const auto& amrrr = AMRRefRatio(camrlev);
467  amrex::average_down(fine_sol, crse_sol, 0, crse_sol.nComp(), amrrr);
468 
469  if (isSingular(0))
470  {
471  Util::Abort(INFO, "Singular operators not supported!");
472  }
473 
474 }
475 
476 void Operator<Grid::Node>::realFillBoundary(MultiFab& phi, const Geometry& geom)
477 {
478  Util::RealFillBoundary(phi, geom);
479 }
480 
481 void Operator<Grid::Node>::applyBC(int amrlev, int mglev, MultiFab& phi, BCMode/* bc_mode*/,
482  amrex::MLLinOp::StateMode /**/, bool skip_fillboundary) const
483 {
484  BL_PROFILE("Operator::applyBC()");
485 
486  const Geometry& geom = m_geom[amrlev][mglev];
487 
488  if (!skip_fillboundary) {
489 
490  realFillBoundary(phi, geom);
491  }
492 }
493 
494 const amrex::FArrayBox&
495 Operator<Grid::Node>::GetFab(const int num, const int amrlev, const int mglev, const amrex::MFIter& mfi) const
496 {
497  BL_PROFILE("Operator::GetFab()");
498  Util::Message(INFO);
499  return m_a_coeffs[num][amrlev][mglev][mfi];
500 }
501 
502 void Operator<Grid::Node>::RegisterNewFab(amrex::Vector<amrex::MultiFab>& input)
503 {
504  BL_PROFILE("Operator::RegisterNewFab()");
505  Util::Message(INFO);
506  /// \todo assertions here
507  m_a_coeffs.resize(m_a_coeffs.size() + 1);
508  m_a_coeffs[m_num_a_fabs].resize(m_num_amr_levels);
509  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
510  {
511  m_a_coeffs[m_num_a_fabs][amrlev].resize(m_num_mg_levels[amrlev]);
512  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
513  m_a_coeffs[m_num_a_fabs][amrlev][mglev].define(m_grids[amrlev][mglev],
514  m_dmap[amrlev][mglev],
515  input[amrlev].nComp(),
516  input[amrlev].nGrow());
517 
518  amrex::MultiFab::Copy(m_a_coeffs[m_num_a_fabs][amrlev][0],
519  input[amrlev], 0, 0,
520  input[amrlev].nComp(),
521  input[amrlev].nGrow());
522  }
523  m_num_a_fabs++;
524 }
525 
526 
527 void Operator<Grid::Node>::RegisterNewFab(amrex::Vector<std::unique_ptr<amrex::MultiFab> >& input)
528 {
529  BL_PROFILE("Operator::RegisterNewFab()");
530  Util::Message(INFO);
531  /// \todo assertions here
532  m_a_coeffs.resize(m_a_coeffs.size() + 1);
533  m_a_coeffs[m_num_a_fabs].resize(m_num_amr_levels);
534  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
535  {
536  m_a_coeffs[m_num_a_fabs][amrlev].resize(m_num_mg_levels[amrlev]);
537  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
538  m_a_coeffs[m_num_a_fabs][amrlev][mglev].define(m_grids[amrlev][mglev],
539  m_dmap[amrlev][mglev],
540  input[amrlev]->nComp(),
541  input[amrlev]->nGrow());
542 
543  amrex::MultiFab::Copy(m_a_coeffs[m_num_a_fabs][amrlev][0],
544  *input[amrlev], 0, 0,
545  input[amrlev]->nComp(),
546  input[amrlev]->nGrow());
547  }
548  m_num_a_fabs++;
549 }
550 
551 void Operator<Grid::Node>::reflux(int crse_amrlev,
552  MultiFab& res, const MultiFab& /*crse_sol*/, const MultiFab& /*crse_rhs*/,
553  MultiFab& fine_res, MultiFab& /*fine_sol*/, const MultiFab& /*fine_rhs*/) const
554 {
555  BL_PROFILE("Operator::Elastic::reflux()");
556 
557  int ncomp = AMREX_SPACEDIM;
558 
559  amrex::Box cdomain(m_geom[crse_amrlev][0].Domain());
560  cdomain.convert(amrex::IntVect::TheNodeVector());
561 
562  const Geometry& cgeom = m_geom[crse_amrlev][0];
563 
564  const BoxArray& fba = fine_res.boxArray();
565  const DistributionMapping& fdm = fine_res.DistributionMap();
566 
567  MultiFab fine_res_for_coarse(amrex::coarsen(fba, 2), fdm, ncomp, 2);
568  fine_res_for_coarse.ParallelCopy(res, 0, 0, ncomp, 0, 0, cgeom.periodicity());
569 
570  applyBC(crse_amrlev + 1, 0, fine_res, BCMode::Inhomogeneous, StateMode::Solution);
571 
572  /// \todo Replace with Enum
573  // const int coarse_coarse_node = 0;
574  const int coarse_fine_node = 1;
575  const int fine_fine_node = 2;
576 
577  amrex::iMultiFab nodemask(amrex::coarsen(fba, 2), fdm, 1, 2);
578  nodemask.ParallelCopy(*m_nd_fine_mask[crse_amrlev], 0, 0, 1, 0, 0, cgeom.periodicity());
579 
580  amrex::iMultiFab cellmask(amrex::convert(amrex::coarsen(fba, 2), amrex::IntVect::TheCellVector()), fdm, 1, 2);
581  cellmask.ParallelCopy(*m_cc_fine_mask[crse_amrlev], 0, 0, 1, 1, 1, cgeom.periodicity());
582 
583  for (MFIter mfi(fine_res_for_coarse, false); mfi.isValid(); ++mfi)
584  {
585  const Box& bx = mfi.validbox();
586 
587  amrex::Array4<const int> const& nmask = nodemask.array(mfi);
588  //amrex::Array4<const int> const& cmask = cellmask.array(mfi);
589 
590  amrex::Array4<amrex::Real> const& cdata = fine_res_for_coarse.array(mfi);
591  amrex::Array4<const amrex::Real> const& fdata = fine_res.array(mfi);
592 
593  const Dim3 lo = amrex::lbound(cdomain), hi = amrex::ubound(cdomain);
594 
595  for (int n = 0; n < fine_res.nComp(); n++)
596  {
597  // I,J,K == coarse coordinates
598  // i,j,k == fine coordinates
599  amrex::ParallelFor(bx, [=] AMREX_GPU_DEVICE(int I, int J, int K) {
600  int i = I * 2, j = J * 2, k = K * 2;
601 
602  if (nmask(I, J, K) == fine_fine_node || nmask(I, J, K) == coarse_fine_node)
603  {
604  if ((I == lo.x || I == hi.x) &&
605  (J == lo.y || J == hi.y) &&
606  (K == lo.z || K == hi.z)) // Corner
607  cdata(I, J, K, n) = fdata(i, j, k, n);
608  else if ((J == lo.y || J == hi.y) &&
609  (K == lo.z || K == hi.z)) // X edge
610  cdata(I, J, K, n) = 0.25 * fdata(i - 1, j, k, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i + 1, j, k, n);
611  else if ((K == lo.z || K == hi.z) &&
612  (I == lo.x || I == hi.x)) // Y edge
613  cdata(I, J, K, n) = 0.25 * fdata(i, j - 1, k, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i, j + 1, k, n);
614  else if ((I == lo.x || I == hi.x) &&
615  (J == lo.y || J == hi.y)) // Z edge
616  cdata(I, J, K, n) = 0.25 * fdata(i, j, k - 1, n) + 0.5 * fdata(i, j, k, n) + 0.25 * fdata(i, j, k + 1, n);
617  else if (I == lo.x || I == hi.x) // X face
618  cdata(I, J, K, n) =
619  (+fdata(i, j - 1, k - 1, n) + 2.0 * fdata(i, j, k - 1, n) + fdata(i, j + 1, k - 1, n)
620  + 2.0 * fdata(i, j - 1, k, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i, j + 1, k, n)
621  + fdata(i, j - 1, k + 1, n) + 2.0 * fdata(i, j, k + 1, n) + fdata(i, j + 1, k + 1, n)) / 16.0;
622  else if (J == lo.y || J == hi.y) // Y face
623  cdata(I, J, K, n) =
624  (+fdata(i - 1, j, k - 1, n) + 2.0 * fdata(i - 1, j, k, n) + fdata(i - 1, j, k + 1, n)
625  + 2.0 * fdata(i, j, k - 1, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i, j, k + 1, n)
626  + fdata(i + 1, j, k - 1, n) + 2.0 * fdata(i + 1, j, k, n) + fdata(i + 1, j, k + 1, n)) / 16.0;
627  else if (K == lo.z || K == hi.z) // Z face
628  cdata(I, J, K, n) =
629  (+fdata(i - 1, j - 1, k, n) + 2.0 * fdata(i, j - 1, k, n) + fdata(i + 1, j - 1, k, n)
630  + 2.0 * fdata(i - 1, j, k, n) + 4.0 * fdata(i, j, k, n) + 2.0 * fdata(i + 1, j, k, n)
631  + fdata(i - 1, j + 1, k, n) + 2.0 * fdata(i, j + 1, k, n) + fdata(i + 1, j + 1, k, n)) / 16.0;
632  else // Interior
633  cdata(I, J, K, n) =
634  (fdata(i - 1, j - 1, k - 1, n) + fdata(i - 1, j - 1, k + 1, n) + fdata(i - 1, j + 1, k - 1, n) + fdata(i - 1, j + 1, k + 1, n) +
635  fdata(i + 1, j - 1, k - 1, n) + fdata(i + 1, j - 1, k + 1, n) + fdata(i + 1, j + 1, k - 1, n) + fdata(i + 1, j + 1, k + 1, n)) / 64.0
636  +
637  (fdata(i, j - 1, k - 1, n) + fdata(i, j - 1, k + 1, n) + fdata(i, j + 1, k - 1, n) + fdata(i, j + 1, k + 1, n) +
638  fdata(i - 1, j, k - 1, n) + fdata(i + 1, j, k - 1, n) + fdata(i - 1, j, k + 1, n) + fdata(i + 1, j, k + 1, n) +
639  fdata(i - 1, j - 1, k, n) + fdata(i - 1, j + 1, k, n) + fdata(i + 1, j - 1, k, n) + fdata(i + 1, j + 1, k, n)) / 32.0
640  +
641  (fdata(i - 1, j, k, n) + fdata(i, j - 1, k, n) + fdata(i, j, k - 1, n) +
642  fdata(i + 1, j, k, n) + fdata(i, j + 1, k, n) + fdata(i, j, k + 1, n)) / 16.0
643  +
644  fdata(i, j, k, n) / 8.0;
645  }
646 
647  });
648  }
649  }
650 
651  // Copy the fine residual restricted onto the coarse grid
652  // into the final residual.
653  res.ParallelCopy(fine_res_for_coarse, 0, 0, ncomp, 0, 0, cgeom.periodicity());
654 
655  const int mglev = 0;
656 
657  // Sync up ghost nodes
658  amrex::Geometry geom = m_geom[crse_amrlev][mglev];
659  realFillBoundary(res, geom);
660  nodalSync(crse_amrlev, mglev, res);
661  return;
662 }
663 
664 void
665 Operator<Grid::Node>::solutionResidual(int amrlev, MultiFab& resid, MultiFab& x, const MultiFab& b,
666  const MultiFab* /*crse_bcdata*/)
667 {
668  const int mglev = 0;
669  const int ncomp = b.nComp();
670  apply(amrlev, mglev, resid, x, BCMode::Inhomogeneous, StateMode::Solution);
671  MultiFab::Xpay(resid, -1.0, b, 0, 0, ncomp, 2);
672  amrex::Geometry geom = m_geom[amrlev][mglev];
673  realFillBoundary(resid, geom);
674 }
675 
676 void
677 Operator<Grid::Node>::correctionResidual(int amrlev, int mglev, MultiFab& resid, MultiFab& x, const MultiFab& b,
678  BCMode /*bc_mode*/, const MultiFab* /*crse_bcdata*/)
679 {
680  resid.setVal(0.0);
681  apply(amrlev, mglev, resid, x, BCMode::Homogeneous, StateMode::Correction);
682  int ncomp = b.nComp();
683  MultiFab::Xpay(resid, -1.0, b, 0, 0, ncomp, resid.nGrow());
684  amrex::Geometry geom = m_geom[amrlev][mglev];
685  realFillBoundary(resid, geom);
686 }
687 
688 
689 
690 
691 Operator<Grid::Cell>::Operator()
692 {
693  m_ixtype = amrex::IntVect::TheCellVector();
694 }
695 
696 void
697 Operator<Grid::Cell>::define(amrex::Vector<amrex::Geometry> a_geom,
698  const amrex::Vector<amrex::BoxArray>& a_grids,
699  const amrex::Vector<amrex::DistributionMapping>& a_dmap,
700  BC::BC<Set::Scalar>& a_bc,
701  const amrex::LPInfo& a_info,
702  const amrex::Vector<amrex::FabFactory<amrex::FArrayBox> const*>& a_factory)
703 {
704  m_bc = &a_bc;
705 
706  std::array<int, AMREX_SPACEDIM> is_periodic = m_bc->IsPeriodic();
707 
708  MLCellLinOp::define(a_geom, a_grids, a_dmap, a_info, a_factory);
709 
710  Util::Warning(INFO, "This section of code has not been tested.");
711  for (int n = 0; n < getNComp(); n++)
712  {
713  m_lobc.push_back({ AMREX_D_DECL(is_periodic[0] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet,
714  is_periodic[1] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet,
715  is_periodic[2] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet) });
716  m_hibc.push_back({ AMREX_D_DECL(is_periodic[0] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet,
717  is_periodic[1] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet,
718  is_periodic[2] ? amrex::LinOpBCType::Periodic : amrex::LinOpBCType::Dirichlet) });
719  }
720 
721  for (int ilev = 0; ilev < a_geom.size(); ++ilev)
722  setLevelBC(ilev, nullptr);
723 
724 }
725 
726 
727 void
728 Operator<Grid::Cell>::prepareForSolve()
729 {
730  MLCellLinOp::prepareForSolve();
731 }
732 
733 Operator<Grid::Cell>::BndryCondLoc::BndryCondLoc(const amrex::BoxArray& ba, const amrex::DistributionMapping& dm)
734  : bcond(ba, dm),
735  bcloc(ba, dm)
736 {
737 }
738 
739 void
740 Operator<Grid::Cell>::BndryCondLoc::setLOBndryConds(const amrex::Geometry& /*geom*/, const amrex::Real* /*dx*/,
741  const amrex::Array<BCType, AMREX_SPACEDIM>& /*lobc*/,
742  const amrex::Array<BCType, AMREX_SPACEDIM>& /*hibc*/,
743  int /*ratio*/, const amrex::RealVect& /*a_loc*/)
744 {
745  Util::Warning(INFO, "This code has not been properlyt tested");
746 }
747 
748 
749 void
750 Operator<Grid::Cell>::averageDownCoeffs()
751 {
752  for (int i = 0; i < m_num_a_fabs; i++)
753  {
754  for (int amrlev = m_num_amr_levels - 1; amrlev > 0; --amrlev)
755  {
756  auto& fine_a_coeffs = m_a_coeffs[i][amrlev];
757  averageDownCoeffsSameAmrLevel(fine_a_coeffs);
758  }
759  averageDownCoeffsSameAmrLevel(m_a_coeffs[i][0]);
760  }
761 }
762 
763 void
764 Operator<Grid::Cell>::averageDownCoeffsSameAmrLevel(amrex::Vector<amrex::MultiFab>& a)
765 {
766  int nmglevs = a.size();
767  for (int mglev = 1; mglev < nmglevs; ++mglev)
768  {
769  amrex::average_down(a[mglev - 1], a[mglev], 0, a[0].nComp(), mg_coarsen_ratio);
770  }
771 }
772 
773 
774 
775 const amrex::FArrayBox&
776 Operator<Grid::Cell>::GetFab(const int num, const int amrlev, const int mglev, const amrex::MFIter& mfi) const
777 {
778  return m_a_coeffs[num][amrlev][mglev][mfi];
779 }
780 
781 
782 void
783 Operator<Grid::Cell>::RegisterNewFab(amrex::Vector<amrex::MultiFab>& input)
784 {
785  /// \todo assertions here
786  m_a_coeffs.resize(m_a_coeffs.size() + 1);
787  m_a_coeffs[m_num_a_fabs].resize(m_num_amr_levels);
788  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
789  {
790  m_a_coeffs[m_num_a_fabs][amrlev].resize(m_num_mg_levels[amrlev]);
791  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
792  m_a_coeffs[m_num_a_fabs][amrlev][mglev].define(m_grids[amrlev][mglev],
793  m_dmap[amrlev][mglev],
794  input[amrlev].nComp(),
795  input[amrlev].nGrow());
796 
797  amrex::MultiFab::Copy(m_a_coeffs[m_num_a_fabs][amrlev][0],
798  input[amrlev], 0, 0,
799  input[amrlev].nComp(),
800  input[amrlev].nGrow());
801  }
802  m_num_a_fabs++;
803 }
804 
805 
806 void
807 Operator<Grid::Cell>::RegisterNewFab(amrex::Vector<std::unique_ptr<amrex::MultiFab> >& input)
808 {
809  /// \todo assertions here
810  m_a_coeffs.resize(m_a_coeffs.size() + 1);
811  m_a_coeffs[m_num_a_fabs].resize(m_num_amr_levels);
812  for (int amrlev = 0; amrlev < m_num_amr_levels; ++amrlev)
813  {
814  m_a_coeffs[m_num_a_fabs][amrlev].resize(m_num_mg_levels[amrlev]);
815  for (int mglev = 0; mglev < m_num_mg_levels[amrlev]; ++mglev)
816  m_a_coeffs[m_num_a_fabs][amrlev][mglev].define(m_grids[amrlev][mglev],
817  m_dmap[amrlev][mglev],
818  input[amrlev]->nComp(),
819  input[amrlev]->nGrow());
820 
821  amrex::MultiFab::Copy(m_a_coeffs[m_num_a_fabs][amrlev][0],
822  *input[amrlev], 0, 0,
823  input[amrlev]->nComp(),
824  input[amrlev]->nGrow());
825  }
826  m_num_a_fabs++;
827 }
828 
829 
830 }
Util::RealFillBoundary
AMREX_FORCE_INLINE void RealFillBoundary(amrex::FabArray< amrex::BaseFab< T >> &a_mf, const amrex::Geometry &)
Definition: Util.H:319
BC::BC< Set::Scalar >
Operator
Documentation for operator namespace.
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Color::FG::Yellow
static std::string Yellow
Definition: Color.H:22
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Eigen::Matrix< amrex::Real, AMREX_SPACEDIM, 1 > Vector
Definition: Base.H:20
Operator::AMREX_D_DECL
constexpr amrex::IntVect AMREX_D_DECL(Operator< Grid::Cell >::dx, Operator< Grid::Cell >::dy, Operator< Grid::Cell >::dz)
BC::BC::IsPeriodic
virtual amrex::Array< int, AMREX_SPACEDIM > IsPeriodic()
Definition: BC.H:114
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Definition: Util.cpp:166
Operator::Operator
Definition: Operator.H:19
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static std::string Reset
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void Warning(std::string file, std::string func, int line, Args const &... args)
Definition: Util.H:178
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#define INFO
Definition: Util.H:20
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@ Diagonal
Definition: Base.H:197
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void Message(std::string file, std::string func, int line, Args const &... args)
Definition: Util.H:138
Operator.H
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