Integrator::PhaseFieldMicrostructure
====================================

:bdg-link-secondary-line:`src/Integrator/PhaseFieldMicrostructure.H <../../doxygen/PhaseFieldMicrostructure_8H_source.html>`

\file PhaseFieldMicrostructure.H

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       <p class="input-reference-description">Initial GB energy if not using anisotropy</p>
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       <p class="input-reference-description">Force Neumann BCs on the model</p>
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           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-lagrange-lambda-0e12cf16c6">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00124"><code>lagrange.lambda</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Lagrange multiplier value</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.lambda</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.lambda</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-lagrange-vol0-0a6753363d">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00125"><code>lagrange.vol0</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Prescribed volume</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.vol0</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.vol0</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-lagrange-tstart-bf701e1bf2">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00126"><code>lagrange.tstart</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Lagrange multipler start time</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.tstart</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>lagrange.tstart</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-sdf-on-8db8112e23">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00131"><code>sdf.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">synthetic driving force (SDF)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-sdf-val-8508b90ee8">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00134"><code>sdf.val</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">value of SDF for each grain</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.val</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.val</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-sdf-tstart-5f97aab1bb">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00135"><code>sdf.tstart</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">time to begin applying SDF</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.tstart</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>sdf.tstart</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-on-d04fc4fe7c">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00151"><code>anisotropy.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Anisotropic grain boundary energy parameters</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-beta-09ad6ede8c">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00155"><code>anisotropy.beta</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Regularization param</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.beta</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.beta</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-tstart-1970000f99">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00157"><code>anisotropy.tstart</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Time to turn on anisotropy</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.tstart</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.tstart</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-timestep-16cb91d36c">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00160"><code>anisotropy.timestep</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Modify timestep when turned on</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.timestep</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.timestep</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-plot-int-3b0efd6591">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00163"><code>anisotropy.plot_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Modify plot_int when turned on</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.plot_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-plot-dt-a7e2517bbc">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00166"><code>anisotropy.plot_dt</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Modify plot_dt when turned on</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.plot_dt</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-thermo-int-4a7d5798b0">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00168"><code>anisotropy.thermo_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Modify thermo int when turned on</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.thermo_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.thermo_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-thermo-plot-int-581eb38212">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00170"><code>anisotropy.thermo_plot_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Modify thermo plot int when turned on</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.thermo_plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.thermo_plot_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-elastic-int-4b59ec18fc">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00172"><code>anisotropy.elastic_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Frequency of elastic calculation</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.elastic_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.elastic_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-regularization-195e47a301">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00177"><code>anisotropy.regularization</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-option">k12</span> <span class="input-reference-badge input-reference-badge-option">wilmore</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Determine the kind of regularization to use</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.regularization</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.regularization</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropy-e9425aae6f">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00187"><code>anisotropy</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-option">abssin</span> <span class="input-reference-badge input-reference-badge-option">read</span> <span class="input-reference-badge input-reference-badge-option">sh</span> <span class="input-reference-badge input-reference-badge-option">sin</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Type of GB to use</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.type</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropy.type</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-fluctuation-on-72e898702e">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00191"><code>fluctuation.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Thermal fluctuations</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-fluctuation-amp-60a41baf28">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00193"><code>fluctuation.amp</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">fluctuation amplitude</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.amp</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.amp</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-fluctuation-sd-7e65b448e2">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00194"><code>fluctuation.sd</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">fluctuation stadard deviation</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.sd</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.sd</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-fluctuation-tstart-7271faa3a8">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00195"><code>fluctuation.tstart</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-required">required</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">time to start applying fluctuation</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.tstart</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>fluctuation.tstart</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-disconnection-on-4203e207b2">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00200"><code>disconnection.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Disconnection generation</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>disconnection.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>disconnection.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-shearcouple-on-3ed0480b73">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00208"><code>shearcouple.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Define explicit shear coupling matrices</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-0-c93d1db16b">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00227"><code>0</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0 0 0 0 0 0 0 0 0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Shear couple matrix from grain N to grain M. (Note that N != M and you cannot specify both N,M and also M,N)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.Fgb.1.0</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.Fgb.1.0</code>
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           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-1-4ae06790cc">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00227"><code>1</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0 0 0 0 0 0 0 0 0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Shear couple matrix from grain N to grain M. (Note that N != M and you cannot specify both N,M and also M,N)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.Fgb.0.1</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>shearcouple.Fgb.0.1</code>
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           </div>
         </div>
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     <article class="input-reference-item" id="input-bc-eta-da54093c05">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00242"><code>bc.eta</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-option">constant</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Boundary condition for eta</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>bc.eta.type</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>bc.eta.type</code>
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           </div>
         </div>
       </details>
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     <article class="input-reference-item" id="input-anisotropic-kinetics-on-effb62d854">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00248"><code>anisotropic_kinetics.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Anisotropic mobility</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.on</code>
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           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.on</code>
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           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-anisotropic-kinetics-tstart-9f16793f0f">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/PhaseFieldMicrostructure_8H_source.html#l00251"><code>anisotropic_kinetics.tstart</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">simulation time when anisotropic kinetics is activated</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.tstart</code>
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           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.tstart</code>
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           </div>
         </div>
       </details>
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     <article class="input-reference-item" id="input-anisotropic-kinetics-mobility-6c287f72bd">
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         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-meta">file path</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">file containing anisotropic mobility data</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.mobility</code>
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           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.mobility</code>
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     <article class="input-reference-item" id="input-anisotropic-kinetics-threshold-fe870bfa2a">
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       </header>
       <p class="input-reference-description">file containing anisotropic mobility data</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>2 executables, 2 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.threshold</code>
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           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>anisotropic_kinetics.threshold</code>
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         </div>
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