Integrator::Integrator
======================

:bdg-link-secondary-line:`src/Integrator/Integrator.cpp <../../doxygen/Integrator_8cpp_source.html>`

\file Integrator.cpp
 \brief Compute the volume integral of two multiplied Fourier series

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         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.base_regrid_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-plot-int-c539f872e1">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00053"><code>amr.plot_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Interval (in timesteps) between plotfiles (Default negative value will cause the plot interval to be ignored.)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-plot-dt-9a07b13439">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00054"><code>amr.plot_dt</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1.0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Interval (in simulation time) between plotfiles (Default negative value will cause the plot dt to be ignored.)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_dt</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-plot-file-576e16f530">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00058"><code>amr.plot_file</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">output</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Output file: see IO::FileNameParse for wildcards and variable substitution</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.plot_file</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-cell-all-b2f3aed38c">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00060"><code>amr.cell.all</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Turn on to write all output in cell fabs (default: off)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.all</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-cell-any-356f2fe284">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00061"><code>amr.cell.any</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-option">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Turn off to prevent any cell based output (default: on)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.cell.any</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-node-all-fcd95db88a">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00062"><code>amr.node.all</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Turn on to write all output in node fabs (default: off)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.all</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-node-any-5943584a4a">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00063"><code>amr.node.any</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-option">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Turn off to prevent any node based output (default: on)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.node.any</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-abort-on-nan-ded97f3226">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00065"><code>amr.abort_on_nan</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Abort if a plotfile contains nan or inf.</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.abort_on_nan</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-max-plot-level-81d3eacf28">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00070"><code>amr.max_plot_level</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Specify a maximum level of refinement for output files (NO REFINEMENT)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.max_plot_level</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-print-ghost-nodes-dc0b4a6a39">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00072"><code>amr.print_ghost_nodes</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">include ghost nodes in output</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_nodes</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-print-ghost-cells-3740a231e9">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00073"><code>amr.print_ghost_cells</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">include ghost cells in output</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.print_ghost_cells</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-on-dfae84cf2d">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00099"><code>dynamictimestep.on</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">activate dynamic CFL-based timestep</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.on</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-verbose-8e2d5a1d65">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00102"><code>dynamictimestep.verbose</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-option">0</span> <span class="input-reference-badge input-reference-badge-option">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">how much information to print</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.verbose</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-nprevious-1e55408f99">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00104"><code>dynamictimestep.nprevious</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">5</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">number of previous timesteps for rolling average</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.nprevious</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-cfl-31cec6b804">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00106"><code>dynamictimestep.cfl</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">dynamic teimstep CFL condition</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.cfl</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-min-30e6fdd94c">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00108"><code>dynamictimestep.min</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">minimum timestep size allowed shen stepping dynamically</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.min</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-dynamictimestep-max-a21d47f35f">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00110"><code>dynamictimestep.max</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">maximum timestep size allowed shen stepping dynamically</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>dynamictimestep.max</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-thermo-int-11b95a6ba2">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00116"><code>amr.thermo.int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Information on how to generate thermodynamic data (to show up in thermo.dat) Integration interval (1)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-thermo-plot-int-6d6c46fb36">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00117"><code>amr.thermo.plot_int</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Interval (in timesteps) between writing (Default negative value will cause the plot interval to be ignored.)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_int</code>
             </div>
           </div>
         </div>
       </details>
     </article>
     <article class="input-reference-item" id="input-amr-thermo-plot-dt-172a882267">
       <header class="input-reference-item-header">
         <a class="input-reference-name" href="../../doxygen/Integrator_8cpp_source.html#l00118"><code>amr.thermo.plot_dt</code></a>
         <div class="input-reference-badges"><span class="input-reference-badge input-reference-badge-default">-1.0</span> <span class="input-reference-badge input-reference-badge-meta">conditional</span></div>
       </header>
       <p class="input-reference-description">Interval (in simulation time) between writing (Default negative value will cause the plot dt to be ignored.)</p>
       <details class="input-reference-resolved">
         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
             </div>
           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>amr.thermo.plot_dt</code>
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             <strong>alamo-3d-coverage-g++</strong>
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               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
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               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
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               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
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               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
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               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.on</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.on</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.on</code>
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           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
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             <strong>alamo-2d-coverage-g++</strong>
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             <strong>alamo-3d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
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               <code>explicitmesh.lo</code>
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           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.lo</code>
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               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
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               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
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               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
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           <div class="input-reference-executable">
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             <div class="input-reference-paths">
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           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>explicitmesh.hi</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
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         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
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           <div class="input-reference-executable">
             <strong>alamo-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>fracture-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
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           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
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             <div class="input-reference-paths">
               <code>integration.type</code>
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           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.type</code>
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       </header>
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         <summary>Names by executable <span>12 executables, 12 uses</span></summary>
         <div class="input-reference-resolved-body">
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             <strong>alamo-2d-coverage-g++</strong>
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               <code>integration.rk.type</code>
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           <div class="input-reference-executable">
             <strong>alamo-3d-coverage-g++</strong>
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               <code>integration.rk.type</code>
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           <div class="input-reference-executable">
             <strong>fracture-2d-coverage-g++</strong>
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               <code>integration.rk.type</code>
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           <div class="input-reference-executable">
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               <code>integration.rk.type</code>
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           <div class="input-reference-executable">
             <strong>hydro-2d-coverage-g++</strong>
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           <div class="input-reference-executable">
             <strong>mechanics-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>mechanics-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           <div class="input-reference-executable">
             <strong>sfi-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>thermoelastic-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-2d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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           </div>
           <div class="input-reference-executable">
             <strong>topop-3d-coverage-g++</strong>
             <div class="input-reference-paths">
               <code>integration.rk.type</code>
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